RNA id: TU102273



Basic Information


Item Value
RNA id TU102273
length 402
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G76450
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27501956 ~ 27502357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtttagcagtcagcattttagccgtgtttaatccagttactactgtggctaacggtaggctaacgctacctgctgTATAACGTgtcattagtgtttactagcgtgacattcagcgatgtttatgttgcctctaacgtgggtttcggagcatcagagcgcaacgcagacatgtaagtgtcagtgtaatgagccacagaaatccgcgtagctatttcgtctggtagataccaggcataccaggcaccacatgcgccgttaacgtgaacagaaaattgcgttgcctgtatctttcacggcaaacatgcatgtgtggaaagcggtcgcacaacagctgaaatggcatactccttcacagtatccttcaataaaggaggaatgtagcacaatatggatgtattagta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102246 lncRNA upstream 138944 27362279 ~ 27363012 (+) True G76426
TU102257 lncRNA upstream 171916 27327078 ~ 27330040 (+) True G76437
TU102239 lncRNA upstream 210524 27290168 ~ 27291432 (+) True G76419
TU102238 lncRNA upstream 229129 27272558 ~ 27272827 (+) True G76418
TU102230 lncRNA upstream 444951 27056783 ~ 27057005 (+) True G76412
TU102274 lncRNA downstream 18335 27520692 ~ 27521513 (+) True G76451
TU102268 lncRNA downstream 53487 27555844 ~ 27565331 (+) True G76445
TU102287 lncRNA downstream 282838 27785195 ~ 27790404 (+) True G76464
TU102288 lncRNA downstream 290415 27792772 ~ 27793211 (+) True G76465
TU102289 lncRNA downstream 292195 27794552 ~ 27794873 (+) True G76466
XM_039805412.1 mRNA upstream 146123 27351851 ~ 27355833 (+) True pnrc2
XM_039804702.1 mRNA upstream 196950 27303310 ~ 27305006 (+) True LOC120561567
XM_039804667.1 mRNA upstream 486854 27013093 ~ 27015102 (+) True utp11
XM_039807189.1 mRNA upstream 546672 26943236 ~ 26955284 (+) True rspo1
XM_039805832.1 mRNA upstream 612121 26886568 ~ 26889835 (+) True dnali1
XM_039807243.1 mRNA downstream 365087 27867444 ~ 27885464 (+) True fam110d
XM_039804991.1 mRNA downstream 460333 27962690 ~ 27983714 (+) True ago1
XM_039804992.1 mRNA downstream 460341 27962698 ~ 27983714 (+) False ago1
XM_039804993.1 mRNA downstream 481696 27984053 ~ 28027526 (+) True LOC120561771
XM_039806614.1 mRNA downstream 545286 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
TU102237 other upstream 213499 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 615410 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 686565 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 1359329 26139901 ~ 26142627 (+) True G76192
TU101746 other upstream 1997904 25502600 ~ 25504052 (+) True apoc2
TU102349 other downstream 446526 27948883 ~ 27952580 (+) True G76511
TU102453 other downstream 739426 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 780919 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 1018342 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 1051215 28553572 ~ 28569866 (+) True G76714

Expression Profile