RNA id: TU102354



Basic Information


Item Value
RNA id TU102354
length 1885
lncRNA type sense_over
GC content 0.41
exon number 1
gene id LOC120561771
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27984053 ~ 28027526 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTCGTTCTTTAAATttatatatgaaatatatatgtGCGGAATATTTTATGGTGTATTTATTTAGAGCGCATTCAAGCGGCTGGAGTCTCCGCATCATATTGCAGCATGGTGGGGGCGGAGCCAGGAGGATGAGGCCTTTAGCCCCTCCCCCTCCATGTTGACGCCTTATTCTCCGAGACACGCAAGCACAACAATATGGAGGGGGCTGCGAGGTGGAGGAAAGGGAGGCAGTGGGTTTGACCTGGTGATAGTTACAGGTCAACTCTCCCTCCTCCGTTCCTTAATATTCTTTAACCTCTTTTAACACCTGAGAAGGCCATATGCCAACCCCCACATGTTGCAGTTCATCTCTTGACGAAGGGAACCATTTCTGAAACCCCACTGACCTGAGTGTTCGAATAGCTGACTCTTTTTTTCATCCCACGCTGCTAATTGGTACGTTAGCCATGTAAATTCCCCGAGCCAGTAAAAAGGGCAGGCGGGAGAgcgtcaaataaaaaaaataaaaaaagcagcgGGGGAAGGAAGGAAATACTGTTTGTTGAAAAGGCAGAATTCTTTGGATCATGGTGAAAATTTTAGCGCtacttctttcctctttcctctttttttctttttacaatttaCAGCAGGAACAGGTCTCATTCCACAAGAAAAGACATGCCTCAGCCTTAAGTGCGTTCTTACATTATCGTCAGTTTCCTACAGTATGTGACTTTGTGATGCCTGTGTTGGGTGGCCTACCAAGAATACAAGCCTATAACGTACTTGATATGCCCTCAATCCCCAACTGGCATTCTCATCTCTTCTCATTTCTCATGTAAACCACTAACACTGCTACAGAACTTACTGAGCTCTAATGTACGAACAAGTGTAAGCTTTGACAGATTGCTCCGTCCCATTTGTAATGATGTCAGAACAGAAACAAGGTCCGGGTCAAACAGCATTTGGAAACAATTCTTGGCATTTATTTCAACCAGATGAGCAGTGCGTACTGCCTCAGGAAAATTCCGATATCACCATAAACATTCTGAATGACATGGAAACATTTTGCTAATTTGAATTTTATTTACacttctctgtgtttgtgtaagcGTATTGGTTatcattttattgtcattgatgGCAAATCCAAAGAACAatatttcagatacagtttGACCCGGGCCTGACGTGAACCAGGAGTGCTGGATTACAGAAACCTGTGCCTGTATAATGAACCAAGGATGAACTGCGTTTTGATGAAttgctgttcttttttttttttttttggatgtcCCCTCACCCCATTGAAGGATCAGAGACATGGAGCTTTTGAGTGTTGTCAATTCTGTCCGAAAGGAAATTGGTCCTTTATCCTTTAAACCAACCATAATACATGTTTACTGTAATGTTTACTCTCATGGCTATCAGACCTGATCAACCTGTTTTTGGCCCATTAGCATTCCAATAATGACTTTGAACCAAATATTGCACAAGAGATTAGGCTCCTGGTGCCGCTTTCCCCTTGTATACACATAATGGTTTTGAAGCAAGATATTTGAAAGTGTCCaatgatttaaaacattttatgtgCACGCTGATTGTtcagattgttttgttttttttcaatgtagCATCACTCTTGTGTCGGTCTTATTTCAAACTAAAGATCTTGGACTCTGATACCTCCTGAGTGATGCACCAGCAAACGGATGTATACGTTGAACAGTGAACCTTTACCACCAGATGATCCATGTCTCAGTCTCTCTGTATGTTGCAAAGGCTCTGTTGTACCAACAGCTCTATTCCTCTCAGTTTTAAATGTCTCTTTCTTTTGTAACTCTCTCTTATAGGTTGTTGGCCTTTTTAGTGTTGCTTTGCTTCAGTTTGAAGTGTATCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102356 lncRNA upstream 2242 28020998 ~ 28023367 (+) False LOC120561771
TU102355 lncRNA upstream 41934 27982146 ~ 27983675 (+) False ago1
TU102357 lncRNA upstream 62643 27962738 ~ 27962966 (+) False ago1
TU102347 lncRNA upstream 86947 27934795 ~ 27938662 (+) True G76510
TU102340 lncRNA upstream 140200 27884377 ~ 27885409 (+) False fam110d
TU102444 lncRNA downstream 206119 28233612 ~ 28236339 (+) True G76579
TU102445 lncRNA downstream 206119 28233612 ~ 28236339 (+) False G76579
TU102484 lncRNA downstream 264507 28292000 ~ 28292560 (+) True G76608
XR_005639885.1 lncRNA downstream 304426 28331919 ~ 28346792 (+) True LOC120562953
TU102543 lncRNA downstream 387437 28414930 ~ 28415653 (+) False drd2l
XM_039804991.1 mRNA upstream 41895 27962690 ~ 27983714 (+) True ago1
XM_039804992.1 mRNA upstream 41895 27962698 ~ 27983714 (+) False ago1
XM_039807243.1 mRNA upstream 140145 27867444 ~ 27885464 (+) True fam110d
XM_039805412.1 mRNA upstream 669776 27351851 ~ 27355833 (+) True pnrc2
XM_039804702.1 mRNA upstream 720603 27303310 ~ 27305006 (+) True LOC120561567
XM_039806614.1 mRNA downstream 20150 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
XM_039806616.1 mRNA downstream 46697 28074190 ~ 28077263 (+) True LOC120562747
XM_039806617.1 mRNA downstream 46697 28074190 ~ 28077263 (+) False LOC120562747
XM_039806634.1 mRNA downstream 235374 28262867 ~ 28272836 (+) True etfb
XM_039806615.1 mRNA downstream 246580 28274073 ~ 28279197 (+) True vsig10l
TU102349 other upstream 73029 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 737152 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 1139063 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 1210218 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 1882982 26139901 ~ 26142627 (+) True G76192
TU102453 other downstream 214290 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 255783 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 493206 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 526079 28553572 ~ 28569866 (+) True G76714
XR_005639746.1 other downstream 773158 28800651 ~ 28834170 (+) False LOC120562342

Expression Profile