RNA id: XM_039804991.1


Basic Information

Item Value
RNA id XM_039804991.1
length 5640
RNA type mRNA
GC content 0.49
exon number 19
gene id ago1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 27962690 ~ 27983714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCAAAGAAGAAGTTTCAGATTTTTGGGGGGTGAGGAGGGGCTGGCCCTTTTTTGTTCCGCTGGAGAATCCTGCTTAAACGGTGAGTAGGGGCACAACAGACCGACGAGCAATCACAGCGCCGCGGACAATCGGCCAAATAACGGCGCCGGGAGGGAGCGCAGCGCAGAGGAACAGTGGTCAGAAATAAGATAGTATCGCCCTCCAGCTCTAACGTTACTACCTCCAGGGTCAACGGGCAGACAAGCATCAGCTATCGCCGTTAGCCTCAACTCCTCTGCGGGTCTGGGGGGTTCTGGCAGGGGCAGGGGCAGGGGGCGGGGGTACACCGAGCAAGGAGAAGACTAACACGCCGAGAGGAGGGGGCTGGAAGTCTGAGACGCTTCCAGCCTGAAGGGGCCGGCGGTTTGGCCACAGCACCCCGGACAAGCTAGCTTGTACCCGCGCGGCTAAGTGAATGGGATGGAGCCGGGACCGTCTGGCGCTGTGCCCATGGGGGCCTTCCCCCCACCTCTGCAGCAGGTGTTCCATGCCCCCCGCCGGCCAGGCATGGGTACCGTGGGCAAGCCCATCAAGCTGCTGGCCAACTACTTTGAGGTCGAGATCCCAAAGATGGACGTCTTTCACTATGAGGTGGACATTAAGCCAGACAAGTGCCCACGGAGAGTCAACAGGGAGGTGGTGGAATACATGGTGCAACACTTCAAGCCCCAGCTCTTTGgcgacaggaagccagtgtatgACGGAAAGAAGAACATCTACACGGTGCTAGCACTTCCTATTGGGAGTGAGAAGGTGGATTTTGAGGTAACCATTCCAGGCGAGGGCAAAGACCGAATCTTCAAGGTGTCCATCCGTTGGCTGGCCAAAGTGTCATGGCGCCTGCTGCAGGAGACTCTGGTCAGTGGTCGGCTGCAGGTCCCCCTCGACTCGGTTCAAGCCCTTGACGTGGCCATGCGCCACCTGGCCTCTATGAGGTACACTCCAGTGGGCCGTTCATTTTTCTCCCCACCTGAAGGATACTACCACCCACTGGGTGGGGGGAGGGAAGTCTGGTTTGGCTTCCACCAGTCTGTGCGCCCCGCCATGTGGAAGATGATGCTTAACATTGATGTGTCCGCCACGGCCTTCTACAAAGCCCAGCCTGTAATTGAGTTCATGTGTGAAGTTTTGGACATTCGCAATATCGACGAGCAGCCCAAGACTCTCACTGACTCGCAAAGGGTCCGCTTCACCAAGGAGATTAAAGGCCTGAAGGTGGAGGTGACCCACTGTGGCCAAATGAAGAGGAAGTATCGTGTATGCAACGTCACCCGGCGACCTGCCAGCCACCAGACGTTTCCCCTCCAGCTCGAAAGTGGGCAGACAGTAGAATGTACAGTGGCCCAGTACTTCAAGCAGAAGTACAACCTGCAGCTAAAATACCCCCACCTACCTTGCCTACAGGTGGGGCAAGAGCAGAAGCACACCTACCTGCCTCTGGAGGTGTGTAACATTGTAGCAGGTCAACGATGCATCAAGAAGCTGACAGATAATCAGACCTCCACTATGATCAAAGCCACAGCTCGCTCCGCACCCGACAGACAAGAGGAGATCAGCAGGCTGATGAAGAATGCTAACTTCAACCTAGACCCGTACATCCAGGAGTTTGGGATCAAGGTGAAAGATGACATGGCTGAGGTGACGGGCAGGGTGCTTCCACCCCCTATCCTGCAGTATGGAGGACGGAACCGTGCCATAGCAACCCCCAACCAGGGAGTGTGGGACATGAGGGGGAAGCAGTTTTATAACGGCATCGAGATCAAAGTGTGGGCGATTGCTTGCTTTGCCCCCCAGAAACAGTGCAGAGAAGAGGTGCTCAAGAACTTCACAGACCAGCTGCGTAAGATCTCTAAGGATGCTGGGATGCCCATCCAGGGCCAGCCATGTTTCTGTAAATACGCCCAGGGAGCGGACAGCGTGGAGCCCATGTTCAGACACCTGAAGAACACCTACTCGGGACTGCAGCTCATCATTGTCATTCTGCCAGGAAAAACCCCTGTCTATGCCGAGGTAAAGCGTGTGGGAGACACCCTCTTGGGCATGGCCACGCAGTGTGTCCAGGTGAAGAATGTGGTGAAGACGTCACCTCAGACCCTCTCCAACCTATGCCTCAAGATCAATGTGAAGCTGGGAGGCATCAACAACATCCTGGTGCCTCACCAACGGTCAGCAGTGTTTCAGCAGCCGGTTATCTTCCTGGGAGCAGACGTCACGCACCCCCCTGCTGGAGATGGCAAGAAGCCCTCCATTACTGCTGTGGTAGGCAGTATGGATGCTCATCCCAGCCGATACTGTGCCACAGTGCGAGTCCAGAGACCCAGGCAGGAAATCATTGAAGATTTGTCTTACATGGTGCGTGAACTGTTAATTCAGTTCTACAAGTCGACCCGGTTCAAGCCCACCAGGATCATTTTCTATAGAGATGGAGTTCCTGAGGGACAGTTGCCCCAGATTCTCCACTACGAGCTCCTGGCCATCAGAGATGCGTGCATCAAGTTGGAGAAAGACTATCAGCCAGGCATCACCTACATTGTGGTGCAGAAACGCCACCACACCCGCCTCTTCTGTGCCGACAAGTCTGAAAGGaTTGGGAAGAGTGGGAATATTCCTGCAGGGACTACGGTGGACACCAGCATCACTCATCCCTTTGAGTTTGACTTCTACCTGTGTAGCCATGCAGGCATACAGGGTACCAGCCGGCCGTCTCATTACTACGTCTTATGGGACGACAATCGTTTCACGGCTGATGAGTTACAGATTCTAACTTACCAGTTGTGCCACACGTACGTGCGCTGTACCCGCTCAGTCTCCATCCCTGCGCCAGCCTACTACGCTCGTCTTGTGGCCTTCCGCGCCCGCTACCATCTGGTGGACAAAGAGCATGACAGTGGCGAGGGCAGCCACGTGTCTGGTCAGAGTAACGGTCGGGACCCCCAGGCGCTGGCTAAAGCTGTTCAGATTCACCACGACACCCTGAGGACCATGTACTTCGCCTGAGCTACACCAACCATCACCACCATCGACCCTTCCCACCTCATTTCTACCTGAGTGGGCGCACGGCCCACCACCACCTCATCCCCATCCCTTATTCCCAATGACTACCcatcacacacactccacagacTTGCCAGTTATTCACCCAAatccaagaagaaaaaaaaagcccttcACCTGTAAATCACAGGCAGACTATACAGCCTCATGCACTCAAACGGTTatgaatattattatttttattgtaattttgttgtttttactttACCGGGACTATTGATCTTTTTATGTAGAATTTTTAAACGTGGGTATTATTATGTACTTGTATTGTACGCTACCTTCACACTCctgtgtatgtaagtatgcaATGCGGATGGGAGGGAAATAGTcgatgaaaagaaaagaaaaaaatcacaaaaaacttTCTTAACTGCCATCACGATGCTGCCTCTTTACCCATCCGAATGCCGGATGCCAGTGTTCCAAGCCCCTTAGTATGGGGATCCTCCAGAGGGGTGGTACTGGGCACGCACACTTACATGTATCATTTTATCGTTGTCATGAACTAcattcatgttttaaatgtttttgaataatgttattttttaaaactgcCTTGAGGAGTCCGAGGTATGGTACATTAGCACTTAGTGTTAGCATGTAGGTGCCACCTGTCCTGCAAAAGACTTTGTTAGTACATGTGAGGCTAGCCCTCTGGTCTTTATATTAGCAGACAGAAAGAGCAGGTGTAGCATATCGTAGATACAGGAGAGAAGTCCTGCCGCACTCTCTGTGCTGATTGGTCAGTCCCTTAGAGATTTAGCCCATAGAGGCAAGCTTAGCATAACAATAGagggaccttttttttttccagtgtatCAAATATACTTGCACCCCATGCACCTAAACCAGCATTATTAACCAGCCAAAAGTGATGCCAACCAATTGAAAAGGGGCACCTAAACAGGAAGATAATCTTTCGTTTCTGTATGCATTGCTCTTTTAGGATTTacgaggcacttttttttttctttttttttacttgatatATTTTACTTCAAAATGGTGAGACTTGTCTGTCCTGAGGCTTGACACAGACTAGTTTGAAGTTTTCACACCAAGACCTGCAGAGCTTTCAGGACAAATAGGTAACTAAGGCAATAGGCAAGGTCAACACTCCTCTTTAGATTTGAATGCAGGCAAATATAAAGTCTGTGATCACTTAAGTGCTGCAAAGCTGAACTCACATTCAGCAATTGACCTTGCTCTGATCATTCTGCACCTTCCAACATGTATCAGTAGAGGTGACGCCACACAGTGCACTCTAAACTACAAACCCGCACACTTCTTTGCATACCTGTACACACCTATCTCCATTTTTACACAAAGCTCTTCCCTCTGGCATTTACAACTCATAGCCTGAATAGCAGAAGCACACACATATCTTCCTTCTCCGTCTCTTTCTTAGCATGTAGAGACCCACTCCTTCAAATGCACTTGTCCCCTTATTTCCCTCCAAGTCAAACTATCACTCATAACCCTTTCCATCATCACATTCTATCCTTGCTGTCTATTCTCACTTTTAACATCACACACCTGCAGCATCCCCTGCACCAATCCCGTATCTTGTGTTAGCCAATCCCTATTGGTGCTCTGTGTGCATGGGCGGCACAGATAAGGGATTGCTACATTGGACAGGGTGGGccactattactattacttaATATGCCCTGCATTTACATCTAGTCACTTTCtggatttgtgaaaaaaatgcatgtaattattttttatgactGGATATTCTGAGCCACCTTATTTTGGTTTCCTTAGAGGTAGGAGCCTTGTGCTCGCCACTGCCTGTTATGGTTATAaagactgcttttttttttttccttttgtcatTATTATGAATATTGTGACTAGTGTCAGAGTGTATCCTCAAGAGGGCACTGTGGAGACGGTCTCAAAATTCCACCTCAGTTGCCCTTTAAGCGCCTCAAATCTTGTCTGATGGTCAGAGCCCCTTTGAGCGGAAAGGGATCAAAAGATCAGATGTGTTTGATTTTGAAATCATGTTTATTAACTCGCAAAGTCAAAATGCCTTTGTACGCCGTTTTACTGATCCTTCTTTGTGTCCAAGGTGatttgtatatataaatatataataataacctGTTATGTATCTTGGCTCACCAGTTGCCAGGCCTTTCACAGTTGGGGCCAGTGTTTTACCCCTCATTATttgctaaaaaaagaaaagaaaagaaaaatcagaCTGGGGGCTTTTTCCAGTACCACTGAAACCAGATGCAGTTCTTCACTCACTGAAGCCACAAAGCACCTTGCAAAGGGGGGAGACGAAATGGCAGTCACCCTGGAAATGCATCATATGGACACCGGAGAGTCCACTCCTCTTCACACAGCCTCACTGTCTGACTAAGCAATATTGAAGCCACTGATCAAGAACAGTCCTTGTCATAGCACTTCCcaatagatttgaatgaaaagaCATGGAAGCATATTATTTTGGCTCTGTATGTGATGGTATGGAAACTCTGTTGGGGTgggttattttttaaataaaataaaattgttttttattaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102347 lncRNA upstream 24028 27934795 ~ 27938662 (+) True G76510
TU102340 lncRNA upstream 77281 27884377 ~ 27885409 (+) False fam110d
TU102339 lncRNA upstream 98955 27863449 ~ 27863735 (+) True G76503
TU102293 lncRNA upstream 152648 27809798 ~ 27810042 (+) True G76470
TU102291 lncRNA upstream 156855 27805618 ~ 27805835 (+) True G76468
TU102356 lncRNA downstream 37284 28020998 ~ 28023367 (+) False LOC120561771
TU102354 lncRNA downstream 41895 28025609 ~ 28027493 (+) False LOC120561771
TU102444 lncRNA downstream 249898 28233612 ~ 28236339 (+) True G76579
TU102445 lncRNA downstream 249898 28233612 ~ 28236339 (+) False G76579
TU102484 lncRNA downstream 308286 28292000 ~ 28292560 (+) True G76608
XM_039807243.1 mRNA upstream 77226 27867444 ~ 27885464 (+) True fam110d
XM_039805412.1 mRNA upstream 606857 27351851 ~ 27355833 (+) True pnrc2
XM_039804702.1 mRNA upstream 657684 27303310 ~ 27305006 (+) True LOC120561567
XM_039804667.1 mRNA upstream 947588 27013093 ~ 27015102 (+) True utp11
XM_039807189.1 mRNA upstream 1007406 26943236 ~ 26955284 (+) True rspo1
XM_039804993.1 mRNA downstream 339 27984053 ~ 28027526 (+) True LOC120561771
XM_039806614.1 mRNA downstream 63929 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
XM_039806616.1 mRNA downstream 90476 28074190 ~ 28077263 (+) True LOC120562747
XM_039806617.1 mRNA downstream 90476 28074190 ~ 28077263 (+) False LOC120562747
XM_039806634.1 mRNA downstream 279153 28262867 ~ 28272836 (+) True etfb
TU102349 other upstream 10110 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 674233 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 1076144 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 1147299 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 1820063 26139901 ~ 26142627 (+) True G76192
TU102453 other downstream 258069 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 299562 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 536985 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 569858 28553572 ~ 28569866 (+) True G76714
XR_005639746.1 other downstream 816937 28800651 ~ 28834170 (+) False LOC120562342

Expression Profile