RNA id: TU102445


Basic Information

Item Value
RNA id TU102445
length 792
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G76579
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28233612 ~ 28236339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGATACAAAACAGTGTAGCGCAGGCAATGCATTGGAGAAGGAGGTCTAGAAAAGGTCATTTCTTGtggtaaagacaaaaaaacagtaaCACATTATTAAGTGGTTGTTGCGGGAATCTTCAGAACTTGCAGCAGAAGCCACAGCCCTTGTTGGCCCTGCAGCAGTTGCAGCACCAGCGGCACAAGGAGAGGTGGCTCTGGCGCTTCTGCCTGGTGTGAGCCGGCATCTGTGCGAGAAGACAAGAGACGTGAGCAGAGCTTTCATCTCCAGCATTTCATCCTCTCCTTGTGTGGAGAGAGCACCAGGGCACTCCATGGGGAAAACACATCCACTTAAATTTTAATTTGCTCTCAGTAATTGgcttaattcattcagtcaatTGAACATACCATCCTCGATTCCATTGACATTTCTTGATATGCCGCAACTGGAGTGTCATTGCTCCctgcctcctccagcccttgcaCTCGGCGAATGGGACCGCAGAGCTCTCCAGAATGCAAATAAAGGCGAGCACGAGTGTCACTGCAACTGCAATGCTAAATGCCTTCATTTTAAGGGGTTTGAATGGTTTAGTTATTAAAGCCTTTGAAGGTTAGAGTTGATAGGTCTTCTTTCTCATGGGTGTCGGGCCACCGAAGAGCACCACAATATCTTCAATGTATTCTTCAGCTCCTGTGATGGATGGTGGTTGTCTGGGCAAGTGGATTTCTTCAGTTCTTTTGGTGACCCTTGTCAGCTCTTTAGAGTCCTTCCGCTGTCTGATAGTTTGAGTATGCAGAGCCTTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102354 lncRNA upstream 206119 28025609 ~ 28027493 (+) False LOC120561771
TU102356 lncRNA upstream 210245 28020998 ~ 28023367 (+) False LOC120561771
TU102355 lncRNA upstream 249937 27982146 ~ 27983675 (+) False ago1
TU102357 lncRNA upstream 270646 27962738 ~ 27962966 (+) False ago1
TU102347 lncRNA upstream 294950 27934795 ~ 27938662 (+) True G76510
TU102484 lncRNA downstream 55661 28292000 ~ 28292560 (+) True G76608
XR_005639885.1 lncRNA downstream 95580 28331919 ~ 28346792 (+) True LOC120562953
TU102543 lncRNA downstream 178591 28414930 ~ 28415653 (+) False drd2l
TU102549 lncRNA downstream 179850 28416189 ~ 28416755 (+) True LOC120562434
XR_005639910.1 lncRNA downstream 200876 28437215 ~ 28438360 (+) True LOC120563095
XM_039806616.1 mRNA upstream 156349 28074190 ~ 28077263 (+) True LOC120562747
XM_039806617.1 mRNA upstream 156349 28074190 ~ 28077263 (+) False LOC120562747
XM_039806614.1 mRNA upstream 174452 28047643 ~ 28059160 (+) True si:dkeyp-97a10.3
XM_039804993.1 mRNA upstream 206086 27984053 ~ 28027526 (+) True LOC120561771
XM_039804992.1 mRNA upstream 249898 27962698 ~ 27983714 (+) False ago1
XM_039806634.1 mRNA downstream 26528 28262867 ~ 28272836 (+) True etfb
XM_039806615.1 mRNA downstream 37734 28274073 ~ 28279197 (+) True vsig10l
XM_039804678.1 mRNA downstream 47056 28283395 ~ 28287777 (+) True lim2.5
XM_039806915.1 mRNA downstream 111271 28347610 ~ 28354162 (+) True LOC120562954
XM_039806916.1 mRNA downstream 111273 28347612 ~ 28354162 (+) False LOC120562954
TU102349 other upstream 281032 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 945155 27284538 ~ 27288457 (+) True G76417
TU102152 other upstream 1347066 26883450 ~ 26886546 (+) True G76355
TU102095 other upstream 1418221 26808118 ~ 26815391 (+) True G76315
TU101929 other upstream 2090985 26139901 ~ 26142627 (+) True G76192
TU102453 other downstream 5444 28241783 ~ 28245161 (+) True G76581
TU102473 other downstream 46937 28283276 ~ 28287044 (+) False lim2.5
TU102606 other downstream 284360 28520699 ~ 28521622 (+) True G76707
TU102613 other downstream 317233 28553572 ~ 28569866 (+) True G76714
XR_005639746.1 other downstream 564312 28800651 ~ 28834170 (+) False LOC120562342

Expression Profile