RNA id: TU102617


Basic Information

Item Value
RNA id TU102617
length 257
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G76717
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28561544 ~ 28572251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtCAATGTTTATAGTTGTCGTAGCTCTTCATACCTTTAACAGAGACAGTTGTTCTTGGAGAGAATGTAAATCCATCTTTCCTCCCATTCAGGTAACCATTAACTCTGAGCTGATATGATCCAGAGTCTGATTCAGTGAGGTCATTGACGATGATGCTGCAGTTCCTCCGTCTCACATCAGGCTCCAACAGTGACACTCGTCCTTTGAACTCTGAAGACTGAGTtctgttgttgttcttgttagTGTGGAATATGAT

Function

GO: NA

KEGG:

id description
ko04670 Leukocyte transendothelial migration

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102611 lncRNA upstream 11166 28550108 ~ 28550378 (+) True G76712
TU102609 lncRNA upstream 16449 28544805 ~ 28545095 (+) True G76710
TU102608 lncRNA upstream 18703 28542598 ~ 28542841 (+) True G76709
TU102604 lncRNA upstream 26778 28534043 ~ 28534766 (+) True G76705
XR_005639910.1 lncRNA upstream 123184 28437215 ~ 28438360 (+) True LOC120563095
TU102620 lncRNA downstream 3265 28575516 ~ 28577647 (+) True G76718
TU102630 lncRNA downstream 17863 28590114 ~ 28598140 (+) True G76726
TU102689 lncRNA downstream 99776 28672027 ~ 28732427 (+) True G76774
TU102681 lncRNA downstream 118364 28690615 ~ 28704632 (+) True G76767
TU102697 lncRNA downstream 119890 28692141 ~ 28693115 (+) True G76780
XM_039806280.1 mRNA upstream 78945 28472676 ~ 28482599 (+) True LOC120562546
XM_039807064.1 mRNA upstream 90464 28441151 ~ 28471080 (+) True phldb3
XM_039807188.1 mRNA upstream 124610 28432322 ~ 28436934 (+) True ethe1
XM_039804943.1 mRNA upstream 130116 28419841 ~ 28431428 (+) True LOC120561728
XM_039806147.1 mRNA upstream 145051 28414518 ~ 28416493 (+) False LOC120562434
XM_039806993.1 mRNA downstream 78042 28650293 ~ 28657142 (+) True zmp:0000000881
XM_039804942.1 mRNA downstream 127649 28699900 ~ 28705326 (+) True LOC120561727
XM_039806064.1 mRNA downstream 138386 28710637 ~ 28728274 (+) True scn1ba
XM_039806063.1 mRNA downstream 138386 28710637 ~ 28728274 (+) False scn1ba
XM_039806065.1 mRNA downstream 194744 28766995 ~ 28773597 (+) True si:ch211-225p5.8
TU102606 other upstream 39922 28520699 ~ 28521622 (+) True G76707
TU102473 other upstream 274500 28283276 ~ 28287044 (+) False lim2.5
TU102453 other upstream 316383 28241783 ~ 28245161 (+) True G76581
TU102349 other upstream 608964 27948883 ~ 27952580 (+) True G76511
TU102237 other upstream 1273087 27284538 ~ 27288457 (+) True G76417
XR_005639746.1 other downstream 228400 28800651 ~ 28834170 (+) False LOC120562342
unassigned_transcript_353 other downstream 274144 28846395 ~ 28846466 (+) True trnag-ucc_8
unassigned_transcript_354 other downstream 274461 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103005 other downstream 756538 29328789 ~ 29330258 (+) True G77009
TU103024 other downstream 811884 29384135 ~ 29389892 (+) True LOC120562177

Expression Profile