RNA id: TU102854



Basic Information


Item Value
RNA id TU102854
length 1306
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC120563088
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28943905 ~ 28951524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGGATTCATCCACTAGAAACCATGAATGGCTGTACCACATTTGGTGCCTATCCATCAAATAAACATTGAGATATTTTAGTTTGGACTAAAGTAGTGGACCGACCAACAGATCGAGATTGCAACCAGAGCCACAGCATGGCTATAAACGGTAAATATCAAACTTAAGGCCATTGTTAAATCTCACCGTGCGTCTGGTTCCACACATGCCAATGTCATATTCAAAATGAAGGTAATTCCTCGTGAATTTACTGGCTTGGCATGTCCCCAGTTTGAGTTGAGAGTCTGGTTCACCGGCGCCCATCATGCTCCTCTGCACCTGCACGAGCATCTTGTTAAATTTGCACATAGTCCTCACGGAAACACTCGAAACGCTGGACGGACTGATGCTAGGCCAAACCGGGAACAGGATCTCCCGGACGGGCTCGGGTAAAGGCTCCAGTCCGGTGCCTTTGGATGGAGAGAAATGCTCCTTCTCCACCAGCGGCAGCCTGGAGTCCACAAACAAGGGGGGGTGCAGGTATGGCGGCGGCAGAGTCGGCGTTTCTCTCCGGGAACCTTTTTTCATCACCTGGGTCGTTTGATTTAAAGCCTCAACCAGCGGCAGCATAAACAATACGGACAGCTCTGCTGGACAGACAGACCTGCCCGGGTGGACACTTGAGAGGAAATCTGATGCAGTCCAGAGCCCTACTGAATACAAGACAGGGGGATTTGGCTTCTGCACGCCCCCTGTTGGAGGACAGAAGGCATGGCTCGCTTGTCGACCTGCTGACGCCTCATGCGGATGACACCTGCGTCCACCTGAGCTGCCATTCTCTTGCCGTGCTGGTCGTCCAGCAGCTGCAGACAGGCACGCTGCAGCCCAGCCAGCTCACCCTCTGAGGACATTAGACATCGCCTCAGCACTGCACTGCCCTGAGAGACATACAGGAAATGCATTTAGCCTGGGTAGGTTTGTTTGAGATGCCCAGCAGGCAACGAAAGGGGAGGTTGGTGTTAAACCACTGAgtgcttttttaaatatatggtGTGAACTTCTGTCAGCAGTGAAAGGATGAACCTTGTTTGTTAGCTGTTCTTCCCTGTATTAAGGTCAgtgtatgtttttgtcactgcagCCCTTACTGTAATGCTTTTTATAATATGTTGTGGCAGTATAGAGAGGCAAATGCcagttttggtttggtttagaTTAGTCATGCAGATTGTTGTCTGCAGAGGTGCGAGTGCAAGCTAACATTTCGTTTTTCCTCAGAAAGTTTGTCAACTGATCATTTTCAAATTTTGGTACCACTCTCTAATACA

Function


GO: NA

KEGG:

id description
ko03030 DNA replication
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU102850 lncRNA upstream 1179 28941062 ~ 28942726 (+) True G76885
TU102852 lncRNA upstream 3550 28939209 ~ 28940355 (+) True G76887
TU102819 lncRNA upstream 62717 28880973 ~ 28881188 (+) True G76859
TU102728 lncRNA upstream 101635 28836396 ~ 28842270 (+) True LOC120562350
XR_005639754.1 lncRNA upstream 102411 28837541 ~ 28841494 (+) False LOC120562350
TU102910 lncRNA downstream 64352 29015876 ~ 29085487 (+) True G76935
TU102950 lncRNA downstream 175431 29126955 ~ 29127212 (+) True G76969
TU102966 lncRNA downstream 274873 29226397 ~ 29244092 (+) False pear1
TU102980 lncRNA downstream 335570 29287094 ~ 29288548 (+) False mex3a
TU102984 lncRNA downstream 345434 29296958 ~ 29302135 (+) True G76995
XM_039806238.1 mRNA upstream 6142 28918527 ~ 28937763 (+) False fli1rs
XM_039806241.1 mRNA upstream 6142 28918527 ~ 28937763 (+) False fli1rs
XM_039806242.1 mRNA upstream 6142 28918527 ~ 28937763 (+) False fli1rs
XM_039806240.1 mRNA upstream 6142 28918856 ~ 28937763 (+) True fli1rs
XM_039806372.1 mRNA upstream 40108 28898084 ~ 28903797 (+) True LOC120562583
XM_039806150.1 mRNA downstream 30007 28981531 ~ 28997434 (+) True dhx16
XM_039804895.1 mRNA downstream 46704 28998228 ~ 29000667 (+) True rnf183
XM_039807052.1 mRNA downstream 51112 29002636 ~ 29004810 (+) True LOC120563046
XM_039807051.1 mRNA downstream 53101 29004625 ~ 29007832 (+) True mgat1a
XM_039806804.1 mRNA downstream 57049 29008573 ~ 29019134 (+) True sh3bp5la
unassigned_transcript_354 other upstream 97122 28846712 ~ 28846783 (+) True trnaa-ugc_7
unassigned_transcript_353 other upstream 97439 28846395 ~ 28846466 (+) True trnag-ucc_8
XR_005639746.1 other upstream 109735 28800651 ~ 28834170 (+) False LOC120562342
TU102613 other upstream 374039 28553572 ~ 28569866 (+) True G76714
TU102606 other upstream 422283 28520699 ~ 28521622 (+) True G76707
TU103005 other downstream 377265 29328789 ~ 29330258 (+) True G77009
TU103024 other downstream 432611 29384135 ~ 29389892 (+) True LOC120562177
TU103032 other downstream 452484 29404008 ~ 29412413 (+) False G77028
TU103301 other downstream 1172178 30123702 ~ 30124638 (+) True G77239
TU103600 other downstream 2183305 31134829 ~ 31136146 (+) True G77447

Expression Profile


TU102854 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU102854 Expression in each Bioproject

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TU102854 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.