RNA id: XM_039806156.1


Basic Information

Item Value
RNA id XM_039806156.1
length 1768
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120562443
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30351495 ~ 30360588 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggcggacttcctgttgggtctAGGgagggagaggaaagcGCCAACTCACTTCCACCTCCTCACGACCCTGCAGCAGaaaaatgtttgcattCCTGATTTGCGCCTTGACTCTGCAGCAAGTGCACTCTGCCTGCGTTGTGCAGACATttgcacagaaaacacagaggttCAGAATGAGATTGTTGACCAACACAATGCCTTCAGGAGAGCGGTTCAGCCTACTGCTTCTGACATGCTGATAATGagctATAGTGAGGAGGTAGCAGTCAGTGCTCAGGCCTGGGTTGACAAATGTATTTTGGCTCATGGAGAACCCAGCACCCACATGCTCAATGGGTATGAATTGGGGTCAAATCTGTTCTATTCATCCTCACCTTACCCGTGGACGGAAGTCATTAAAGCCTGGCACAGTGAGGTGTCAAGCTACCTGTATCCCAAAGGCTCCACCAACGGCCAATCTATTGGTCactacacacaggtGGTGTGGAACAGCTCCTACAGAGTTGGCTGTGGAATGACATTGTGCCCGAACAACATCTATTTCTACGGCTGCAATTATTATCGAGCAGGAAACTTCAAGGGATGGCCACCTTATAAGGCTGGACCCCCATGTGCTTCCTGCCCCAATGACTGTGAAGACAAACTCTGCACCAACCCCTGTCCttacataaacaaatacatcAACTGTCCTACCTTGAGCGTCACGACTGGATGCGGCAATAAGCTGGTGAATGACTGGTGTCCTGCTTCATGCAACTGCACCAATCAAATCATTCCTATAGCCTAAACACAAGCCATTGAGTCTGCAAATTGTACTCAATCTACACATTTACATCTTTGTTGGTTCTCTGTCTAAGCTACTTTAACTGTAATCAATTTCCTGAAAGCTTATAATAATATACTCATGACGTAACCAAAGAACATATTTCTGAAAATATTGTGGTTTAGCACTGGTTGCCTTAAATTAAAGGGATgttttgggagtgttttaaatTATGTATCGCTAACCAAACCCCCTTGGGACACTTCGTCAGAGTTTTGTGAAATAGTCCCAGTGTTGCATGCACATCATGTTGGATTTCACTCAACCTGCAGGGCCATGCATGATGCCATATGGGGATATCTCCCACTCCGCGTTATGAATTGCAAGAAATGTGTCAGCACAAGCAAGAAATCCACCCAAGCTAAAGATAATATAAACCACAAATATGAATTCTACACAATCATACAAAAAAGACTACATTGGATATCAAGTGGTGTATGCTGTTTGTGTTATGGTTGATAAGAGTTAAACATCTCATGGCTTATGCTACAACTAAAGTAATGAGATGTTTAACTCTTATCAACCATAACACAATTACAACATACaccagcatatatatatatatatatatatatatatatagaggaaAATAGCGTCCCTCTACCACACGTCCCCTTGTGATGCcacaatatatgtatgtatgtacacacatatatatatatataggagcCATGTATATTACGTTTGTTTATGGTTTATAGTTTTCACCTATTACGTAACGTAGGATGTCATGGGGGTTGGTCTCCCAATCAGTCTATTTATACACCTGGACACCTGCATTGCGGAGGctagagagagagggtgagctggggtttttgcattttctgttgatcgCAAGTTTTCCACATTTAGGTTTACCTTTTTGCAGTATTTTCAGACAACTggattttgtttattaatgtttttttcccactttCAAATGAACAATAAATCCTCGAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639712.1 lncRNA upstream 132892 30216748 ~ 30218603 (+) True LOC120562235
XR_005639689.1 lncRNA upstream 230399 30118008 ~ 30121096 (+) False LOC120562092
XR_005639690.1 lncRNA upstream 230399 30119598 ~ 30121096 (+) True LOC120562092
TU103297 lncRNA upstream 230406 30118008 ~ 30121089 (+) False LOC120562092
TU103292 lncRNA upstream 241950 30102763 ~ 30109545 (+) False rgl2
TU103334 lncRNA downstream 37688 30398276 ~ 30402704 (+) True G77260
TU103458 lncRNA downstream 326750 30687338 ~ 30731600 (+) False rab5ab
TU103534 lncRNA downstream 616153 30976741 ~ 30977081 (+) True G77399
XR_005639811.1 lncRNA downstream 617739 30978327 ~ 30988733 (+) True LOC120562708
XR_005639812.1 lncRNA downstream 654545 31015133 ~ 31016447 (+) True LOC120562710
XM_039804935.1 mRNA upstream 127971 30218997 ~ 30223524 (+) True LOC120561719
XM_039806155.1 mRNA upstream 134800 30212639 ~ 30216695 (+) True LOC120562442
XM_039805838.1 mRNA upstream 139259 30205177 ~ 30212236 (+) True LOC120562234
XM_039805839.1 mRNA upstream 139259 30205177 ~ 30212236 (+) False LOC120562234
XM_039805835.1 mRNA upstream 146439 30186399 ~ 30205056 (+) False brd2b
XM_039805822.1 mRNA downstream 2119 30362707 ~ 30389624 (+) True LOC120562225
XM_039805821.1 mRNA downstream 2120 30362708 ~ 30390432 (+) False LOC120562225
XM_039806574.1 mRNA downstream 344443 30705031 ~ 30713391 (+) False si:dkey-82o10.4
XM_039806573.1 mRNA downstream 344444 30705032 ~ 30713391 (+) True si:dkey-82o10.4
XM_039806816.1 mRNA downstream 362509 30723097 ~ 30731609 (+) True rab5ab
TU103301 other upstream 226857 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 939082 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 961603 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1021237 29328789 ~ 29330258 (+) True G77009
unassigned_transcript_354 other upstream 1504712 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103600 other downstream 774241 31134829 ~ 31136146 (+) True G77447
TU103881 other downstream 1615730 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 2044545 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 2044545 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 2739825 33100413 ~ 33101534 (+) True G77888

Expression Profile