RNA id: XM_039806816.1


Basic Information

Item Value
RNA id XM_039806816.1
length 2714
RNA type mRNA
GC content 0.43
exon number 6
gene id rab5ab
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30687338 ~ 30731609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGATTCCAGTCATACGATCTGTCATCATCCTTCGTACAATGCGAAAAGGGAAGTTGAAAGTGGGAGATCGCAGAGCCTTATGAAATTTAACGTTACGGTAGCTTGCTGGGTCATcgacacactgaacagacacTGAAGTGCAACAAAGATTGTCCTGGAGACACCATTCAAAATAACTAGCTTCCTCTTTTTGGTAGGTATTTTCTACAGTTATTCACAGTACCTCAGCGTCCAGAGGAAGAGACCGGGCAGTGTGACATGGCAAGTAGAGGCGGAGCTACACGACCCAATGGGCCAAACGCAGGCAACAAGATCTGCCAGTTCAAACTTGTGCTCTTAGGAGAGTCAGCTGTGGGGAAGTCGAGTCTCGTACTTCGTTTCGTCAAGGGACAGTTTCACGAATTCCAAGAGAGCACAATCGGAGCTGCCTTCCTGACTCAGACAGTATGTTTGGACGACACAACAGTCAAGTTTGAAATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGTCTGGCTCCAATGTACTACAGAGGTGCCCAGGCAGCCATTGTGGTGTATGATATAACAAATGAGGAGTCATTTGTACGGGCTAAGAACTGGGTTAAAGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCTCTGGCTGGGAACAAGGCTGATCTCGCAAACAAGAGAGCTCTGGACTTCCAGGATGCACAGTCATACGCAGATGATAACAGCTTGCTTTTTATGGAAACCTCAGCAAAGACCTCTATGAACGTGAATGAGATATTCATGGCCATTGCAAAGAAGCTACCCAAGAATGAGCCTCAAGCGGCCGGAGCCAGCAGTGGGCGGAACCGGGGAGTGGACCTGACGGAGACGGCTCAGCCCACCAGCCGTTCCTGCTGCAGTAACTAACCTGGCTCTTCCTGCTCATCCTtcccacacacccccccccccatcgcCCCTCCCAACTGAACATCTGGACATCGGGCTCCTTGGCTTCCTGACGTCAGACCTGACCGTCAACCTCACTCCCCTGGAATAGCTAAAAGACTCTGTATAGCTGCATTTCTaatacctattttttttttgttgatgttcttttgtttcttttttttttttttttactttttttaagaaGTGTATATCAGTATAATGGATGCATGTATCACTACAACgcctaaaacacatttttatctctTATTCAGTTTGAAGACTAACCCCAATTAAGAAAGATGAGCATGCGAGAAACCTGTGAACGTgtgattgtgttgtgtgtgaataTCCAAGTGCGAGTTGCCGATGAGAAGGTGTAGCCTCATTTGTCACTTCACAGGGTCGACTGGATGCGAATGGTGTTACCTGTAATATTCTTTGTGTGTGGGTTAAGTTATGCTCACAATCAGAAGAAAACCAAATTGTTCCCATCTTGAGACGCCTGGCTTTGCAGACTGTCTGTTGTGAGGCATCACTGTATTTAGACAGTGCCAGGAAAAGGACTGATGTGCAAACCAAGAATCCCTCCCTTCCACACATCTGTTACATAAGAAGACATCTTCATCCAAGGCTCCTAACGGAAAGTGCGGAAAATAAATTTGGTACTGTCCAGTTTTTAAATAATTggaaaatgcacacaaaaaaaggctttgagTATTGAGAAGAAAAACCGCCTTGATACACATCTGGCTTCCTTTTATGCACAACCATCTGTAGAGCAATATGGGCTTGTCACATTGCAATACACCATATTGAACAACAAAGTCTTCTTGGTatggaaaacatttttattttttttaaagtgtgggAACATCAGGAACCAACACCTTGAGGTCAACATGAGGCCCGTATGacaggatttttatttttattttggctttGCTATTTAACAAATGCTTTCAAATCCATCACAGAAGTTACATTTTTGACACTGATATGTTTtcacatgaaaaagaaaatcaacagGGAGCTTAAAGACTGTTGAACATCCTGCTTTTTGAGTTGCAAAGACTTGAACATACGGCTAGTTCTATGTTAAACTCTTGTCTTTGTCAATCCGCTCTGGCCAGTAGTAAACCTGCATCAATTTGGGTGATCTCAATCAAAggtagggggggagggggtagaATAGAGTTCAGCcagcacacaaacagaaaattggTCTACTACCTATTGTCACAAGTATGTGGAAAAACAAATATACTCTAATGTTGTTATAGGGTGCAATGTTGTCTTCTTCCTCCTTTAGCACAGCTTGCAGAGCTCCTGAGCGCACCAGGAAATGATCTAGGGATTCTGAACAATTGTACAGTTCAATAtaggtctgttttttttttttttcttcatcctaGACCTTGTCACAAACTGGTCAAATGTTAAGCAGTGGTGGTCTTTTTAGGTAAATGTAGTGTTATTAACAAAATCCCTCTCTCTTGTTACTTTTCTCCGAAAAGGTCCATGGTCATGTTTGAAAGGAACTTTTATTGCATTGCACAGTGTTGATCATGTTTTAATTAATGACTGCCCTTCGATTTTATATGACGGACTGTATTGGACTTGCTAACCTACAGCTATAAGCAGGTAGCATAATTAACCTTACTGGTGGTCTCTCATACAGCTCAATGAATTTTAATGATGTGAAACAGCATTACTAGTGATGGGCTGATCAGTTTTGAGTGTCTGAATACAACTTAATAAATTCAATAAAGAGGTCTCTTCTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103334 lncRNA upstream 320393 30398276 ~ 30402704 (+) True G77260
TU103340 lncRNA upstream 362567 30360158 ~ 30360530 (+) False LOC120562443
XR_005639712.1 lncRNA upstream 504494 30216748 ~ 30218603 (+) True LOC120562235
XR_005639690.1 lncRNA upstream 602001 30119598 ~ 30121096 (+) True LOC120562092
TU103297 lncRNA upstream 602008 30118008 ~ 30121089 (+) False LOC120562092
TU103534 lncRNA downstream 245132 30976741 ~ 30977081 (+) True G77399
XR_005639811.1 lncRNA downstream 246718 30978327 ~ 30988733 (+) True LOC120562708
XR_005639812.1 lncRNA downstream 283524 31015133 ~ 31016447 (+) True LOC120562710
TU103737 lncRNA downstream 782527 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 786154 31517763 ~ 31518618 (+) True G77554
XM_039806574.1 mRNA upstream 9706 30705031 ~ 30713391 (+) False si:dkey-82o10.4
XM_039806573.1 mRNA upstream 9706 30705032 ~ 30713391 (+) True si:dkey-82o10.4
XM_039805821.1 mRNA upstream 332665 30362708 ~ 30390432 (+) False LOC120562225
XM_039805822.1 mRNA upstream 333473 30362707 ~ 30389624 (+) True LOC120562225
XM_039806156.1 mRNA upstream 362509 30351495 ~ 30360588 (+) True LOC120562443
XM_039805799.1 mRNA downstream 177421 30909030 ~ 30949188 (+) True LOC120562210
XM_039805800.1 mRNA downstream 219624 30951233 ~ 30965417 (+) True LOC120562211
XM_039806558.1 mRNA downstream 236972 30968581 ~ 30976242 (+) True nr1d2a
XM_039806559.1 mRNA downstream 257154 30988763 ~ 31008397 (+) False LOC120562709
XM_039806561.1 mRNA downstream 257853 30989462 ~ 30996435 (+) True LOC120562709
TU103301 other upstream 598459 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 1310684 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 1333205 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1392839 29328789 ~ 29330258 (+) True G77009
unassigned_transcript_354 other upstream 1876314 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103600 other downstream 403220 31134829 ~ 31136146 (+) True G77447
TU103881 other downstream 1244709 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 1673524 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 1673524 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 2368804 33100413 ~ 33101534 (+) True G77888

Expression Profile