RNA id: TU103600


Basic Information

Item Value
RNA id TU103600
length 555
RNA type TUCP
GC content 0.54
exon number 2
gene id G77447
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31134829 ~ 31136146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATAAGGTGTCAGAAGGCAGCAATGGAGGAGGAGTCGGCAGTTGTGTCTTGTCCTCAGGCGGGGCCTTTAGAGTGGGACCTGCCGGCCCGATGGCTCCCGTCATCACCACATGGCGGTTGGGGTCCTTCACGTCAAACTGTGGAAGGAACTCTGTGACAGGTCTGAAGGGTTCCCTGTCGAAATGTGGAAATCTCTGAGTCTCTGTCGGTCCACTTCTGTCGTCTGTCTTGGGTCTCTGTGGAGTGATGGGTTCTCTGTCGGGTTGTGACGCTGGAGGGCCGGGCACCATCTGTACTTTCCTGAAGTCTCCTGTGAAGGTGGGGGTGTCGGTATCTGTCCTGTACGGAGGTTCTCGAACGTTACCGGCGACCTCGGTGATTCCTGGAGGCAGTCCGGAGCTCGGGACTGAGCTGAACAAACGTTTCTCTCCATCCTCACAGATACGACTCAGCAGTTTTCTCTCCAGAGCTGCAAGACCAGAAGACCAAAACCGTAAATATACAGTTATATACTCTTCTGCATAGTTTAATCTCTGTTTTTCTGAGCACCAGTCC

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639812.1 lncRNA upstream 118382 31015133 ~ 31016447 (+) True LOC120562710
XR_005639811.1 lncRNA upstream 146096 30978327 ~ 30988733 (+) True LOC120562708
TU103534 lncRNA upstream 157748 30976741 ~ 30977081 (+) True G77399
TU103458 lncRNA upstream 403229 30687338 ~ 30731600 (+) False rab5ab
TU103334 lncRNA upstream 732125 30398276 ~ 30402704 (+) True G77260
TU103737 lncRNA downstream 377990 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 381617 31517763 ~ 31518618 (+) True G77554
TU103740 lncRNA downstream 389037 31525183 ~ 31525583 (+) True G77558
TU103778 lncRNA downstream 474912 31611058 ~ 31611311 (+) True G77591
TU103779 lncRNA downstream 476335 31612481 ~ 31614315 (+) True G77592
XM_039805380.1 mRNA upstream 3745 31114749 ~ 31131084 (+) True si:dkey-256h2.1
XM_039805386.1 mRNA upstream 50312 31065765 ~ 31084517 (+) True sept7b
XM_039804660.1 mRNA upstream 90422 31024984 ~ 31044407 (+) False LOC120561533
XM_039804659.1 mRNA upstream 90423 31024984 ~ 31044406 (+) True LOC120561533
XM_039806559.1 mRNA upstream 126432 30988763 ~ 31008397 (+) False LOC120562709
XM_039805377.1 mRNA downstream 27273 31163419 ~ 31175385 (+) False mios
XM_039805375.1 mRNA downstream 27274 31163420 ~ 31175385 (+) True mios
XM_039805376.1 mRNA downstream 27274 31163420 ~ 31175385 (+) False mios
XM_039805374.1 mRNA downstream 27274 31163420 ~ 31175385 (+) False mios
XM_039805381.1 mRNA downstream 40643 31176789 ~ 31201260 (+) True LOC120561996
TU103301 other upstream 1010191 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 1722416 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 1744937 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1804571 29328789 ~ 29330258 (+) True G77009
unassigned_transcript_354 other upstream 2288046 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103881 other downstream 840172 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 1268987 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 1268987 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1964267 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 2489785 33625931 ~ 33626002 (+) True trnap-agg_3

Expression Profile