RNA id: TU103756


Basic Information

Item Value
RNA id TU103756
length 2582
RNA type TUCP
GC content 0.42
exon number 1
gene id G77573
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31516455 ~ 31519036 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGATTGTTCGCTGCAAGGTTTTACTTCCCAGAACTGCTTCTGCCCACGTGTTTGTCGGCCAGAGAGTGTGCAGCGCCTGCGGCAAAGACTTCCTGCAGGCCGAGGATACACCTGCTCTGTTGAACAGGTCCTCACCGAGCCAAACACGTACGTCAGGGCCGTTCCctaagggggaggggggggagccTATTGTGCTAAAAGCTGCTGAACTTGTAGAACACTATCCAGCTATTAAGAAACACTGTCACAGGCTGGTCTGTTTTCTTGCAGTGTTTattcaattcaactttatttcagacacacagGTCCATATCAGTATGAACATATGTTAAACACAACATCACAGACAAGACAAAAAAGTTACAATGTTACAGTGACATTTGTTCCAATGTTTCCAAAAGCAACAAGTGTACCTTGTGTCACTCTGTTTGGGGTCAGCTAAAGCCATTATaattagcctggttgacaccagttATTACTGAgcgtgggtctggggaaggttcattaacagctcatttccaaaggggcgtcaccaacggacgccgctcaaatgcctctgggcgccaACTAgacagtccttcaaccaatcagaccaaacgatccgggtgatgtagcagcgacagcggcatcaacgggttgctgcactCCGGTGgcagtcatgttgaatgtaaacaagaagctgctcgccgtcgctgcgctatcgtcgtcgCGTAAACCCCGCctcgacggttgtgattggtgcctcgatttggaaaaattggaaatgggcttgaatgggctcttggccagacggacttgcagagcaaatctcaaatatgccggaagttcatcagggttttcccaggctacatTACAATTACGTTTTTTTGTACATACAATTTCTCACCACAGCATGAAAGGTGGGAACATTCCTAGTCACAAACATATGACTCGCACTCGTCCATCTTGGCAGTTTGAGAAAGATTCTGAATGCATCGTTAAGTGCCACCTGAAGCTTTCTCATTTTTGCCTTACTATAGCTGCACCACAAGTGGGCTGTATAGAGTGGAGTACAGTAGGCTCTAAAAAAGGACAGTTTTAACATCATCTGTGCACATGTGAAATTTACGTGCCAGCATATTGGCTTGTGCAGAGTTTGCAACACTGCTTATTCATCCCTCCTTGTGTTTATGAGGTGCATGTCGCAGCTTgcaaacattctgaacttagaatatgtttttttcttttatttgtcgACTTTTTATTCTAAAACACACTCTCCAGttatttctcttctttctttgcaGTTTGTTTTCCTCCAAACACTTTAAAGAACAGGCAATTTATTTACCTTTAAATTCACGTTAGGTATAGGTACACAGTGCGTCATATTAACATAAATATTAATCCTGGTTCTATTACTGATTTGAAAAGTGcggtttaaataaagtttttaacTAACTAcaaagctctgattggttaatTGTTTCTTCAGCTGGAAGAAACAGCAATGACCTTTTTGGCAATCTCAGCCAGGCCATCTCTAGCAGGATCTATGTTAAAATAACAGTACTGTAAATTAGTAATAGGGCTGCAAAACATATCTGTAATCTATCTTTATCACTGAGCAGgcttcttttttcctctcttctgaGTCCAACTTCCTGTTTCTGCGTCATTCACTTTTCCTTCCATTCACTTTTTTTCCGATGTCAGTATGCGGGACATACGCTGTAACCACAGCtgacaagaaagaaaaacatcccCTGAAATCCCCAGACTGCCGTTCCCGTAGCATGTTTAACAAGCAAGTAAAAAGCTTTTGGACTCATTGTATGAAAAatttgattttcaaaataatgcATGTCATGGCTTCAGATGCCCAGGGTAATCAGCGTAGTGATTTTGGGGGCGCCACTGAAATGTACTGATTGCTGAACAAGGCATCATCTGTCTTCTCTGTGGCTTCAGAGGCAGGTGGAGGTGGACACTGGCTACTTTTGAAGGATCTGCTTTCAGTCCTCGCTGTGTCTCTGAGCTCAGGGGCCCCCGCTGCAGCATATCAAACGTTGCCCAAAAACAAAGCTactttgtgtctgttttttttttgtttttttctccgtGGCCGCAAAGATAGATTGCTAATGAGGCCTCCAGTCTCTAAGCTCAGATCTAGCTTTGAGACTCTTGTCTCGGGTTTCAGCTCacattgcaaaaaaaagtaGACTTTATCAGTCCGCTCTCGTTTCTGCAACTCAAGTACAGCTTAAAGGGATTCTTTTAAACCTCTTTTTGGTAGGTTTATGGTTTCTCAGAATATATTTAAAGAGACAGTCTGCATCAGTGCTGAATTTCATCTTTCTCTCATGCAGTTGCtggtttttttttgcatgttacTCCAGAATTGTTATCTCTAAAAAAAGATGTATTTAATACActtgcatttaaatgtttttttgaatgATTAAtttctttgttgggagtcaaaTTCATCTGCTAAATATTGATGAGCAGGCTTTAATTAGTTATGGTGTTAGTCTTTCATTCATTAAAGATGGCTGCTGGtgtttcattttttgtattgtatttcagGAAAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103755 lncRNA downstream 56 31515230 ~ 31516399 (-) True G77572
TU103754 lncRNA downstream 1286 31514130 ~ 31515169 (-) True G77571
XR_005639676.1 lncRNA downstream 339622 31166789 ~ 31176833 (-) True LOC120562002
TU103645 lncRNA downstream 397755 31118130 ~ 31118700 (-) True G77477
TU103642 lncRNA downstream 403053 31112837 ~ 31113402 (-) False LOC120561999
TU103760 lncRNA upstream 4608 31523644 ~ 31523967 (-) True G77577
XR_005639911.1 lncRNA upstream 28748 31547784 ~ 31575403 (-) True LOC120563104
TU103784 lncRNA upstream 107548 31626584 ~ 31626881 (-) False LOC120562592
TU103795 lncRNA upstream 124041 31643077 ~ 31643282 (-) True G77608
TU103895 lncRNA upstream 438213 31957249 ~ 31959398 (-) True G77695
XM_039805698.1 mRNA downstream 15008 31449472 ~ 31501447 (-) False vwdel
XM_039805695.1 mRNA downstream 26857 31449472 ~ 31489598 (-) False vwdel
XM_039805697.1 mRNA downstream 28633 31449472 ~ 31487822 (-) True vwdel
XM_039805329.1 mRNA downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XM_039805328.1 mRNA downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XM_039807205.1 mRNA upstream 64676 31583712 ~ 31606739 (-) False etv1
XM_039807214.1 mRNA upstream 64676 31583712 ~ 31606706 (-) False etv1
XM_039807213.1 mRNA upstream 64676 31583712 ~ 31606706 (-) False etv1
XM_039807204.1 mRNA upstream 64677 31583713 ~ 31606737 (-) False etv1
XM_039807206.1 mRNA upstream 64677 31583713 ~ 31606734 (-) False etv1
XR_005639674.1 other downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XR_005639672.1 other downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XR_005639671.1 other downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XR_005639673.1 other downstream 119952 31239787 ~ 31396503 (-) False LOC120561969
XR_005639670.1 other downstream 119952 31239787 ~ 31396503 (-) True LOC120561969
TU104072 other upstream 906361 32425397 ~ 32433657 (-) False LOC120561540
XR_005639667.1 other upstream 2071485 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 2576607 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 2611007 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 2973310 34492346 ~ 34493195 (-) True G78321

Expression Profile