RNA id: TU103881


Basic Information

Item Value
RNA id TU103881
length 3527
RNA type TUCP
GC content 0.43
exon number 2
gene id G77682
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31976318 ~ 31979909 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctttttatttttaatatttcatcCCATAAACTCCATACTAGAAGATACAGAGaattccttgaatggcttagtagaagagaagaaaaagtctCAGTATCTGCTTTGGCTGAAAGAAATTCATCACTGAATGCGTGATacagaaaccttttataaatatgtttcagttgtttttccAATGATTTCAtgatttcatttatttctgacAATCTGTGATTCATTGAGAGAGAAAAGTGAACATAATGGCAgtcagtgaaaaaaaagaactcaAAGAGTTTGGGTGGTGATATATATTTCTCAAGGTTTACaaataactattttttttttttaaatgcggcatagtacattacacattatttcCAGAgagcaaaataaatatattgcaCTTAAAAATCATCAAAACACAATCTCGTTCGGTGTCGTATATTATGGCATACAAAAGAaagctttttgtttaaaaaaaaacaacattattttGAGTGGTAAGTTGggactatgtgtgtgttttaaaaggggaaaaaagtgttttacgTACTGATGGAAATCGACATTCAGTTGATTTGTACAAACAAAGCTCAGGTTTCACATCAGTGAAGGAACAAGAGCTGATCTCCAAAGCAAAGAAAAGGAAGTTCAAAATACAAGATTTCCTCAATAAACCGATGATGAAAAATAACTGCTTGCACATTATGGATATGCAAGGGTTCAGAACAGAAGGATTTTGTCCATATATTTCACTGCAACGGACTTCATATGATGTAAAATGTGCCCAGCTGGGACATTGACAGTGTTTGTGAAACCAGCTCATCTATCACTTTCATACATTTTGTTTCGAATTCTGCAAAGAGCAGCATTGGAAGTGTCGTCATCCATCACACGCACCTGAATCCACACAACGCTCCACTTCCGATGTGTCAAAATGTTGCCTTCATGACTCAAGAAGCTGAAATATTTAACTGTGTTTCTTTGGATTTTGTGCATAAAACGTGACAGCCTCACTGCAAAAAGTCTCCATAAATCAGAAATGTGAGTCTCTATCATGAAACAAGTAACTTGAGTGTTACTCGAATTGAGACTACGGCTGATTTGTGTTGGAAACAGTCTGAATAAATCggaaaaaacaagcaattttatctatatttatatttatataatttatatatctaCAATAAGTTAATATCATCTAATATATAGGTCTAGCTCTAGGTTTTAGGACTCAATTATAGACAACAGCTGCTTGATAAAATGGAGAGTTATTGCTGTGGAGTTCTTGGATTGAATataaacataatatatattaaacataataaaaatgtattcaaaaacaACAGTATTAATTGTCCCTAGGACCATCTCACATGTGTAGCTTGTATTTCTTCTTAATTTTTCAAATAAATTACTCTAACTACTCCACCAGTGAGCTGCCATTTttatgcacctgcacccatacGGAGTGCGAGTCGACTCCGGCGGCTTCCAGCTTCTCCCTGtctgcatgttttaaatgagACCGCAGAGAGCCATTATTTTCCAGGTGTGGACGCCCTGTTGGCACGCTCTGATGCAGCCATGAATCAGCTCGGCAACACCTCTAAAGACCAACTGCTAAAAGGCTGCAGTCGACAGTCGGCAACTGAAGACGGCGTGGAGACAAACCTGGCGTTTCTACCCAGACGCTGCGGTCTGTTTGCCGTGAAGTCCCACTGCTGTTACCCTTCAGATGTTTTCTGAACATTAAAGCGATTACTATGCATTGGCCACTGACTTCAAATCCTACCAGTGGAAACAGATGTATGATGGCTACCATTTATGGCTGGTTTCACACAGTACATTAAAATATGATACTCTAAAACTGATGATTTGAACTCAACACATTTTGTAATTGATTCCCTCTTAACCCGGTCACACCAGGAAGTAACACAACGAAATTCATCCGCACGTTTTCGCAGAATGGGCGGTGTTTGAGGCTTGGTGACCTGACGGCCAACACGCTAGCGCTAGTTAGTCACAATAACCCACAGCGTTTCTTTGTATTTTCTCTGTATTGGACAGCTAttcaagctagctagctagctagtgaacAGTCAGTTCAGTAGCTCGTTGGCCAGTTTGCTAACACACAGATAATTCAAAAGGCATATTTGTACCATCAACTCCTGTCTCATATCTATCTGCAATCCATGCCTCCTTTGTGGAGAAGTTAACACTCCAGCAGAGGAGCTTAAATAAAAATTGTATGGAGCAACACAGCTTATAAGCTACGATAGCTTCCAACATTTTGATGCCCAAACTTCGCCATTATAAATGCTGATGTGACCGGGCCTTTAAAGTATGCAAACAGCCTTCACCCCTGTTGCAGGTTAGAGCTTATTCATCCCATATTATTCCATATAGTAAGTCCAGCGTGTTTGTCTACTGCAGTCAGCATGCGTcctatgattatttttttttgcactctacagtgagtaaatgttgcattttcAAGTTTGTACAATGCTCTTTAACGTGTTTCTGACATTATTTTCAACAGAGCGTGAAGTCTGAACTGTACATATGGCTGGTTTCTAGAAAACAGAGGAAAGCTGAGATTCCGATATGCTGAAATGTTCACAGACTCCGACTACGCCTCGGTgtccaacatactgtagcatcGGACGAGTCTCTCCGAAAATCTTCATCTTAGGTTGCACTGGTGGATCACACAGCAACCTGCCGTCTTTAAAGCCCCGGTGGAGACCCTGTAGGGACTGTTACACCCGCAGAGGGTGTCtaaataatggttaaaataagtTTAGGTTGAGGATCCACTTTCTGTTCTCCAAGGGCCAAGACCAAACATGCTCCTTGTATCGTCTCGCGTCAGGCTTTATAGTTTGTTTTGAGGTTGTAAGTGTTTGTACAATGTCACTAAAGGGTTCATAGAAACCACAGGACCTGCTGATGTGTCCGCAGGTCCTGTGGAGGCGCCGCAgtccttttttcttttggtgTGGATTTTCTGGATCAGTGCGCCACCTTCTCTTCACCTCACTCGCAGCAGGTGAACTATTTACAAAGACCAGGGGGAAAGATACAAACAGGATGAGGAGTGATGAGTCGGAGTGGAGAAATAACTGGTTGCGCTGGATTGGGGATCAGAGCGAAGATCGCCCGTCTCCTCCCCAGGACGGAGTCATACAAAGGGCGTCATGACCGTGGAGGTGTGGCGGAGTCCCTGGATGGCGGCATAGGGCCCCTGCTGGAAGTAGTGGTGGTAGCGGGGCATGTGGAAGGAAGGGAAGGACGGCCCACTGCCCTGCATGGTTCCAGCCAGAGCGGTGGGCGTCAGCGGCATGCCCAGTCGGCTGTAGGGGGGCAGGGAGCCCTGGATGGGGTGGGGCAGGGAGGCGGCGCCGGTGCCCATGGCCGACAGGGACTGTGGGTGCTGGAAGCCCGAGAAGCCCGAAGTGGTGGTGACCCAGGAGCTCAGGGAGAGGTTGTCTGAGGCGGTGAACGCCGAACCTGCAGGAAACAGGGGGCAGATGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103864 lncRNA upstream 33524 31942035 ~ 31942794 (+) True G77669
TU103860 lncRNA upstream 41256 31933085 ~ 31935062 (+) True G77666
TU103780 lncRNA upstream 353152 31622827 ~ 31623166 (+) True G77593
TU103779 lncRNA upstream 362003 31612481 ~ 31614315 (+) True G77592
TU103778 lncRNA upstream 365007 31611058 ~ 31611311 (+) True G77591
TU103882 lncRNA downstream 142 31980051 ~ 31982392 (+) True G77683
TU103883 lncRNA downstream 2559 31982468 ~ 31982716 (+) True G77684
TU103884 lncRNA downstream 5557 31985466 ~ 31985740 (+) True G77685
TU103887 lncRNA downstream 9977 31989886 ~ 31990370 (+) True G77687
TU103929 lncRNA downstream 158868 32138777 ~ 32140143 (+) True G77722
XM_039805810.1 mRNA upstream 16920 31949622 ~ 31959398 (+) True herpud2
XM_039805808.1 mRNA upstream 28545 31943411 ~ 31947773 (+) True pkdc
XM_039805809.1 mRNA upstream 28545 31943411 ~ 31947773 (+) False pkdc
XM_039806455.1 mRNA upstream 44271 31917746 ~ 31932047 (+) True LOC120562640
XM_039805701.1 mRNA upstream 471656 31500830 ~ 31504662 (+) False arl4aa
XM_039806046.1 mRNA downstream 110249 32090158 ~ 32124377 (+) True dpy19l1l
XM_039805801.1 mRNA downstream 165483 32145392 ~ 32149331 (+) True LOC120562212
XM_039805628.1 mRNA downstream 186410 32166319 ~ 32193048 (+) True smarcc1a
XM_039805629.1 mRNA downstream 186410 32166319 ~ 32193048 (+) False smarcc1a
XM_039806158.1 mRNA downstream 224845 32204754 ~ 32212177 (+) True LOC120562445
TU103600 other upstream 840172 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 1851680 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2563905 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2586426 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 2646060 29328789 ~ 29330258 (+) True G77009
XR_005639638.1 other downstream 425224 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 425224 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1120504 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1646022 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1651130 33631039 ~ 33631110 (+) True trnap-agg_4

Expression Profile