RNA id: TU103884


Basic Information

Item Value
RNA id TU103884
length 275
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G77685
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31985466 ~ 31985740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGAATTGTAGGCTAACTAGCTAGAATTTTCACAGTGTTTTGTAAAAGTAAAGTCTATGTAAGCATTTGTTACTGATAACTTGGGTTAATAAGTGacgtgttttttattttttatttctagaGACAAAAGAGGAATAAAGTGCTCACATGTCCGTGCTGGTCCAGTTcgttgtttgtcagtttgaCTTTCTCGAAGGAAACCATTTGCTTCATGAGCTGCTCTCCAGTGAACGGTGAGTCCGGGTGGACGTACAacctgcaggaggaggagaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103883 lncRNA upstream 2750 31982468 ~ 31982716 (+) True G77684
TU103882 lncRNA upstream 3074 31980051 ~ 31982392 (+) True G77683
TU103864 lncRNA upstream 42672 31942035 ~ 31942794 (+) True G77669
TU103860 lncRNA upstream 50404 31933085 ~ 31935062 (+) True G77666
TU103780 lncRNA upstream 362300 31622827 ~ 31623166 (+) True G77593
TU103887 lncRNA downstream 4146 31989886 ~ 31990370 (+) True G77687
TU103929 lncRNA downstream 153037 32138777 ~ 32140143 (+) True G77722
TU103984 lncRNA downstream 309355 32295095 ~ 32295320 (+) True G77757
TU103992 lncRNA downstream 374805 32360545 ~ 32369078 (+) True G77764
TU103989 lncRNA downstream 388957 32374697 ~ 32376913 (+) True G77762
XM_039805810.1 mRNA upstream 26068 31949622 ~ 31959398 (+) True herpud2
XM_039805808.1 mRNA upstream 37693 31943411 ~ 31947773 (+) True pkdc
XM_039805809.1 mRNA upstream 37693 31943411 ~ 31947773 (+) False pkdc
XM_039806455.1 mRNA upstream 53419 31917746 ~ 31932047 (+) True LOC120562640
XM_039805700.1 mRNA upstream 480804 31500847 ~ 31504662 (+) True arl4aa
XM_039806046.1 mRNA downstream 104418 32090158 ~ 32124377 (+) True dpy19l1l
XM_039805801.1 mRNA downstream 159652 32145392 ~ 32149331 (+) True LOC120562212
XM_039805628.1 mRNA downstream 180579 32166319 ~ 32193048 (+) True smarcc1a
XM_039805629.1 mRNA downstream 180579 32166319 ~ 32193048 (+) False smarcc1a
XM_039806158.1 mRNA downstream 219014 32204754 ~ 32212177 (+) True LOC120562445
TU103881 other upstream 5557 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 849320 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 1860828 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2573053 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2595574 29384135 ~ 29389892 (+) True LOC120562177
XR_005639638.1 other downstream 419393 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 419393 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1114673 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1640191 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1645299 33631039 ~ 33631110 (+) True trnap-agg_4

Expression Profile