RNA id: TU103922


Basic Information

Item Value
RNA id TU103922
length 1796
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G77718
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32122575 ~ 32124370 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaatattttattctttttaaaatacagacaAAATAGACATTAGAAAAGACATCTGAAACACATTTATGTTTGCGACAGGAACAAACTACTTCTGTCAAAGTGTTTTGGGAAGAGCGGCTACAATCCTTAAAAAACGGACACTCGACCTAGAAGATCACTTTTACACCGTGAAACTTCCGTCTTCGTACAAGTAAGACACAAACCAACAGCTCGGACAATCAGAACGACAAAATGTCCCAGATTAAATGTGTACTGTGTGATTTGTTCAAGCCCTCGCTCCGGCACATTTAATCTCACCGCAGAAGGACTGTTATCTCATTCTGGCGCCCAATCAACGAAATCACCTGCACCACGATGTGTTGTGTACCGAAATTATTTTAACCCGTTACAAGTTCATACACAAAGAATACATTAAAGCGGAGAGAAGCTCGCAGCCTTTTCAGAAACGAAAAACCCGTTAGGGAATATTTGATAAGTAGTAATCGATAATTGTGAAGGACATCCCATCATGTTGGAGGAGTAAACATGCAACAGAACAGTTCTGTGGGGCGTGGGCTTAAAGTCACGCTCTTGCAGGAGGAAAAGGGATCAGAAAGAGAAAACATTTTTCTCCTGTTGCTACCCCTCaacaacattttgagaaatacaaTAACTAGCCTTCCCAAAAATGAAATAAGGAGATTGATAAAGCTCTCCTATACAGACCTgatatcgatcttctcatctaaccaAAAGATCAGCCAAAAAGCAAATAAGTCTATTAGGTGAGATATTGAACGGTCATTAATGCGCCCTGAAGAAGGAACCAACGACTGCTACCATTTACATAAAATCCACTGCTACAAAAAGTTTGGATTGGCTGTCACAGAACTCACAAATGTAATGTTCTTAAttactaaaaacattttttttttttttttttatgtgctacAGTCCCCCGAATCTGTAGCTTCAATATCAACACTTCCTTTGGCAATAAACAGTAATTCAAGAAACAAAAATAACCTTTTGAAGGCCGAACATTGGTATTGTACAAAACAACAGTTTGGGTATTTACATAAAAGTTGGAACAGGGCACAGTTGAGAAAATTCTTTGCTAGTTTATGACTAAATTAAGAATGAAATGTCTTCTACTGTGTGAAATTCTGAATTCCAATGAATTCCGTCTGGGCTGAATGATATGTAgtacaaatgtttttaaaagctTCCAAACACAAGAACAGAATGTTCCCCTGCGAGTCCAAAGACTCTTAAAACATTGTTGGCTTCTACAGAAAACGTCTCTGAACTTTGCATAAAAATATATTCacagaaataaattataaaaatcgTGTACTactgaaaaactttttttttcttttctacgaGATCAACACTGCGCATAACAATACAGGAAGTCAGCTTTTGTCAAGTTTGCAAAGGGTATGGCTTCACAGTATGTGGACATCGTCGACTGGTCCAGACAAAATGTACTTCTTCGGCACGAGAATTTTACACAGTTAGAAACAATACTGATGTATGAACAGCATCTCTTTGAAGACAATGTTTCTTAAACTAAAGATTCTATACAACAGAACCAATGCAACAGACTAAATAAAGAGCTACGACCCCTTTTAGCTTTAACTTGGGCACCAATGGGCGTAATGGGGAAACTCGCCGGATGACAACGATGCAGCAACAAGGATGATTGGCAAAATGTGGGGAACAGGGAGTTCCTTGAAGTCACGAGAACTGCAAACGCACCGAGTGTGGAGAGACTCAGACGGTTTAGGCGTGTCCAACCGATTAGTGTACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103899 lncRNA downstream 145048 31976633 ~ 31977527 (-) False tbx20
TU103897 lncRNA downstream 160924 31958291 ~ 31961651 (-) False G77695
TU103895 lncRNA downstream 163177 31957249 ~ 31959398 (-) True G77695
TU103795 lncRNA downstream 479293 31643077 ~ 31643282 (-) True G77608
TU103784 lncRNA downstream 495694 31626584 ~ 31626881 (-) False LOC120562592
TU103924 lncRNA upstream 294 32124664 ~ 32127330 (-) True G77720
TU103951 lncRNA upstream 47681 32172051 ~ 32174497 (-) True G77741
TU104027 lncRNA upstream 102898 32227268 ~ 32294617 (-) False G77793
TU104031 lncRNA upstream 125554 32249924 ~ 32250441 (-) True G77797
TU104026 lncRNA upstream 149151 32273521 ~ 32294617 (-) True G77793
XM_039807287.1 mRNA downstream 132210 31976484 ~ 31990365 (-) False tbx20
XM_039807286.1 mRNA downstream 132210 31976484 ~ 31990365 (-) True tbx20
XM_039805807.1 mRNA downstream 179811 31933067 ~ 31942764 (-) True ankmy2a
XM_039806454.1 mRNA downstream 199867 31918056 ~ 31922708 (-) True sostdc1a
XM_039806451.1 mRNA downstream 205703 31863992 ~ 31916872 (-) False crppa
XM_039805806.1 mRNA upstream 3052 32127422 ~ 32136906 (-) False LOC120562215
XM_039805805.1 mRNA upstream 3052 32127422 ~ 32136906 (-) True LOC120562215
XM_039805803.1 mRNA upstream 14408 32138778 ~ 32143278 (-) True LOC120562213
XM_039805804.1 mRNA upstream 36647 32161017 ~ 32164516 (-) True LOC120562214
XM_039804928.1 mRNA upstream 252546 32376916 ~ 32403422 (-) True ptpn23a
TU103756 other downstream 603539 31516455 ~ 31519036 (-) True G77573
XR_005639672.1 other downstream 726072 31239787 ~ 31396503 (-) False LOC120561969
TU104072 other upstream 301027 32425397 ~ 32433657 (-) False LOC120561540
XR_005639667.1 other upstream 1466151 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 1971273 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 2005673 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 2367976 34492346 ~ 34493195 (-) True G78321

Expression Profile