RNA id: TU104026


Basic Information

Item Value
RNA id TU104026
length 1218
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G77793
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32227268 ~ 32294617 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATGTTAAAAAGATTTATTTCAACAACTGTCTGAATCTTGTTGGTTTATTCTCAGTTCGAAGTcccaaaaaagtacaaaataaaacaaaaaaaacaagtacaTCAAAGGATTAGAAATCACATCAATGAAAACCAAGACACATCGTGTTGCTTCTTTTGAAATCAATCCAAGCAATTTTAGTTTTCTCCAATATTTATACACACTCACTGGATTAGTCAGACAAACATCAAAACCTCTCAGTAGCTTTATCTTaactatcttttcttttttttttttttacaatgacgTATTACGTACGTTTTAAATTTCTGtatgatttatttctttttacaaaatacaccaaTGCAGGCaggggaaggtgtgtgtgtgtgtatacatataaGCATGTTTATGTGTTCAtcttttcactgtgtgtgtgtctgcatgtgtgagtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtatatgtgtgcttgtgtgtgtgagtgtatgtgtgtgtgcgcaggtaAGAGATAAGGGATAAGGGAGTAGAGTGACAGCAACAATGGGGGAGTGTAAGGGGGGGGTTGCAAGGCGGCGGCAGGGAGAGGTTTGTGGGAGGGGGTTTTACTTTCAGCAGGGGCagtggcggcggcggcggcggtggtggtggtggtggtgtacgttttttttttttttttgcagcggcccgggccGCTTGGTGGCAGTGTTGCCGTGTTGGAGACAGTTGCAGACTGGGTTTGGCTGGCTGGTACGTTGACAGGCTggctggttggttggttggttggttggttggtagACCGGTTAGGCGCACTCGGCAGCGGGCGGACGGAGAGCAGTGGGAGATTCGGGGGCTCCCGTTGCCAGGGGCACCTTGGCGTTTGTCGGTGTTGTGTTGTCAGGTTGTTGGGTTGGGGGTAGGGggttgtttttgctttgttctcACATCATGTTGTTCTGCAGTGAGTTTACCTCCGAGGAGTTCTCCTCGCCCAGGACCTTGTGGTTCTCGTGTTTGGGGGTCAGAGAGTTGTGGATGTTGAGGGAGTCGTCCTCCTTGGGTGGGGCCTTCACCGGGTCCTCAAGCTTGTTCTGGGAATTAGGATCATCATTTGGGTGGGAGCCCTCAGCGATGGTGGACAGCGAGAAATTATCATTGTGCTGCTCCGATGAAGGCCGGTACTTACTGCGCTTGCGCAGCTTCTTGTTCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104031 lncRNA downstream 23080 32249924 ~ 32250441 (-) True G77797
TU103951 lncRNA downstream 99024 32172051 ~ 32174497 (-) True G77741
TU103924 lncRNA downstream 146191 32124664 ~ 32127330 (-) True G77720
TU103922 lncRNA downstream 149151 32122575 ~ 32124370 (-) True G77718
TU103899 lncRNA downstream 295994 31976633 ~ 31977527 (-) False tbx20
TU104063 lncRNA upstream 109675 32404292 ~ 32404638 (-) True G77829
TU104081 lncRNA upstream 171555 32466172 ~ 32466730 (-) True G77847
TU104062 lncRNA upstream 311411 32606028 ~ 32624339 (-) False sema6e
TU104084 lncRNA upstream 393795 32688412 ~ 32688631 (-) True G77850
TU104100 lncRNA upstream 489628 32784245 ~ 32818546 (-) True LOC120562114
XM_039805804.1 mRNA downstream 109005 32161017 ~ 32164516 (-) True LOC120562214
XM_039805803.1 mRNA downstream 130243 32138778 ~ 32143278 (-) True LOC120562213
XM_039805806.1 mRNA downstream 136615 32127422 ~ 32136906 (-) False LOC120562215
XM_039805805.1 mRNA downstream 136615 32127422 ~ 32136906 (-) True LOC120562215
XM_039807286.1 mRNA downstream 283156 31976484 ~ 31990365 (-) True tbx20
XM_039804928.1 mRNA upstream 82299 32376916 ~ 32403422 (-) True ptpn23a
XM_039804929.1 mRNA upstream 83044 32377661 ~ 32403421 (-) False ptpn23a
XM_039804666.1 mRNA upstream 130748 32425365 ~ 32434867 (-) True LOC120561540
XM_039805603.1 mRNA upstream 186027 32480644 ~ 32644969 (-) False sema6e
XM_039805608.1 mRNA upstream 186027 32480644 ~ 32644969 (-) False sema6e
TU103756 other downstream 754485 31516455 ~ 31519036 (-) True G77573
XR_005639672.1 other downstream 877018 31239787 ~ 31396503 (-) False LOC120561969
TU104072 other upstream 130780 32425397 ~ 32433657 (-) False LOC120561540
XR_005639667.1 other upstream 1295904 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 1801026 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 1835426 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 2197729 34492346 ~ 34493195 (-) True G78321

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021435 False 1370 processed_transcript 0.48 4 NC_007127.7 42321927 ~ 42374180 (-)
bowfin (Amia calva) TU169489 False 457 lncRNA 0.33 2 CM030138.1 12613973 ~ 12646080 (+)
tiger barb (Puntius tetrazona) TU169489 True 932 TUCP 0.45 2 NC_056714.1 20441965 ~ 20452450 (-)
mexican tetra (Astyanax mexicanus) TU316398 True 4839 lncRNA 0.39 4 NW_019170804.1 233198 ~ 238908 (+)