RNA id: TU104101


Basic Information

Item Value
RNA id TU104101
length 246
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G77867
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32821243 ~ 32821488 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAGGTTAGAGacgcgagcttgtgaccgggaggttgttggttcaatccccagaccggcaGGATAACCTGGGTGCTGTCCCTCCCTcatcaccaccactgaggtgcccttgagcaaggccttttaaccccaaccgctccagtggagctgctcagtggccagcagatcagactgtggttgtactgggcagcttccaggtgtgaaaactgtgtgaatgtgatcagggtgttcctgTAAAatagaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104096 lncRNA upstream 54735 32766271 ~ 32766508 (+) True G77862
TU104008 lncRNA upstream 367833 32453187 ~ 32453410 (+) True G77776
TU103989 lncRNA upstream 444330 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 452165 32360545 ~ 32369078 (+) True G77764
TU103984 lncRNA upstream 525923 32295095 ~ 32295320 (+) True G77757
TU104133 lncRNA downstream 106846 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA downstream 130489 32951977 ~ 32952703 (+) True LOC120563080
TU104139 lncRNA downstream 196033 33017521 ~ 33050500 (+) True G77887
TU104142 lncRNA downstream 200610 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA downstream 200610 33022098 ~ 33028671 (+) True G77890
XM_039804931.1 mRNA upstream 399771 32405133 ~ 32421472 (+) False LOC120561717
XM_039804930.1 mRNA upstream 401059 32405133 ~ 32420184 (+) False LOC120561717
XM_039805906.1 mRNA upstream 447056 32315022 ~ 32374187 (+) False LOC120562270
XM_039805905.1 mRNA upstream 447056 32318207 ~ 32374187 (+) True LOC120562270
XM_039805907.1 mRNA upstream 506330 32309084 ~ 32314913 (+) True elp6
XM_039805766.1 mRNA downstream 31869 32853357 ~ 32888350 (+) False LOC120562193
XM_039805768.1 mRNA downstream 47607 32869095 ~ 32888350 (+) True LOC120562193
XM_039805769.1 mRNA downstream 47616 32869104 ~ 32888350 (+) False LOC120562193
XM_039805774.1 mRNA downstream 71043 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039805775.1 mRNA downstream 71053 32892541 ~ 32900329 (+) False tnfaip8l2b
XR_005639638.1 other upstream 399771 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 399771 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 841334 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1685097 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2696605 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 278925 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 804443 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 809551 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 810154 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 1017588 33839076 ~ 33861112 (+) False bmper

Expression Profile