RNA id: XM_039805117.1


Basic Information

Item Value
RNA id XM_039805117.1
length 3974
RNA type mRNA
GC content 0.47
exon number 3
gene id ensab
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33022098 ~ 33032895 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTCGTTACGCCATTTTTGTTGGGGAGAAGTCGTGTCAAGAAAAGGAGGATTAGATTCAGTACAGGTATATCAAACGGTATCTCGTATATTCATCTCTTCGAGTTGTCCGCAAAAAGGACACTTGCTTGTCCATCACGCTCACACAATGTCGTCAGAAAACCTGGACTCGGACACTCAGGTGGACTACGAGGACGAAAAACAGGACTCCCAGGAGAAGAATGCAAACCCCGTGAAGTCGGAGGAGGCCAAGCTGAAAGCCAAGTACCCCAGCCTGGGCCAGAAGCCCGGCGGCTCAGACTTCCTGATGAAGAGACTACAGAAAGGGcaAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAGGCCAAGATGAAGAAGCTTCCCGTGGCGGGGCCCGACAACAACCTGGTGACCGGCGACCACATTCCCACGCCGCAGGACCTGCCCCAGCGGAAGTCCTCCTTGGTGACCAGCAAGCTAGCCGGCTAGCCGCCATCATCCTAGAATCACCATCGCGGGGCTCCCGTCAaatctccctcctcctcaccccccaatatgtccccccccccctgtcttCTGTTTTTATCCCAAGGCGCCACTGGCTTTAACATGTCGGGCAGAGTTGTAGAAGTTAAAACTCCCATTTGCTTGTATGTGGCTGGGGCGGGAGGGACGGAGGTTTAGGGGGGCCCATGAGGTCGCAGCCTTCTCTGCCTTCCCACCACGCACAGCTCTGCCCCCCTCTGCGCACTCTGCTCTGCCGCCTCCCTTATGTCTTGGTTTTTCGGTGTTCCAAGATGCATCACAGTAGGTGTGTCATCGGGCAGGGGTTGGATGGGGTGAGTTAATGCACTTTGTAGTCTGTATAGTAGGCGTTGTTCTTTTTTGATCCTAAATGACACCAAAATAATGCGTGCAAGGGAGTTAGGAACCATGATCGCTGCGcgtccccccccccgcccccccttgATTTTTCCCGTTCCCTATCTGTGCTGGTGGCTGGCTCTGGCGGGAGGGGTTTGAAAGATGGATGTGAATAATTGCTTGCATAccaaatctgcgaggggccgctGCCTCCTAGCTCTTTAGCATTCACTGACATCGCATGGGGAAATGAACGGAGGCTGCCTTTCATCTCGTCATCTGCTGCAGCTCAGCCAAACAGGAATTTTGAAGCGCCACGCCCCCCACCACCCTCCTCTCTGCTAATGTTGCTTTAATTCTTGACTCCCGTTGCTCCTGTTCTCTCTAAATATGCTGCACGATTTGTAACgtaacaaaaaagaaattttttctttttttttttttttaaacgggaGTGGGGCGTCAGCTTAGTGATAGGAAGTATCAAAACAAACACACGGAGCCCTGAAGCGTCCACAGTCccacttccttccttccttcctttttcctTTCTGCTGTCCCGACAATCCATGTACACGCACTCCTGTAAGCAACCCAGGGCAGGAGCCAGCTGAGTATACCcttgtattattttttactgGCTTCAGTCTTAGTTTGGTTGATGTCGCGGTGCGTCAAGACGTGGGTTTACCATGCGCCTAAAAGATTTGTGGGGGTATTGAAGCACCCGGCGTAGAGTATATGCTTCTGTAAATAATACACAACCACGCATCTTTGTGATAAGCTCGCCGCCTTGAGGACCAGACCGGCTAACCAGCCTGAGAGAAATGGTAGCGCTAAATCGATTTCGGGCTTGGAAATGATATGCTTTACCGACGGAGCCAAATTTTGTACCGCGGCTCTCAGGCTCAGAGGCCAGTGGGTACACCTCGTCTTTCCAACTGGACCGTCGCTATCCAATCATTTGGCTCACACGAAGCGGACTGCAGTCTGGCTCGCATGGGTGTTTGGATCTCGTGGAGGTATGAACAGTGATGCGATGTGAATTAACTTGCCAGTCATCTTGTGAAACACACGTCCAAACACCACCAAAAGTTTTAGGATTCACAAGCGAACACATGTATTTTGCCTGGACCGCTATGTCCGATCACAAAAGTCCAAtttgaaaagacaaaaacaacctCAGTCCTAGACTTCGTAGTTGTGTGCCCCACAATGGCGCATGTCCTGTGAAAATTGTTTTAAGACATTTTGGGACAGACCAAAACAATTATTCTTATTCGAGCTGCTTGTTAAAgataaacattgtgttttatttctcaTGTGTTCTTCTAGCACTTCCAGAATATATATAGTGGTTCCCTTGACATCTTTCCTTCTTTGGCATTTGACGTTGTGAAATACTCACTAACTTAATTTCAAGAATAATACTACTTTGCTGCCCTTAAACCTTAGCTGGAGAATAGGCCTGCTTTTCCTACCAGCGCCCCGTAGAACTAACTGACACGCTACACAGACTGGTCTTTGATCTCAGGGGTGTCAGAGGGTGAACAGCAGGCAGCCCGGTAACAACAGGTGTCAGCCCAGCTCCCAAGATCGTCATCGCGGGCTTAAAGTGGGACACCGCATGCCTGCAGGATGCGCTCACTCCTACACTTGGCAAAGCAGAGAGAGATTTTATACCAAATGGTGCAAGGGGGTGGGCGGTGAGCGCACACGCTCTGCGCTTGAATCCCACCTGTTAATGTGGTTCAACCTCTGAAAGAGGGGAACGATGCGATCAGCAAATCTGAGCGGACTTTTTGAGTGTGTGCCATCCACACGTTCACCATTTTGAACTGGACGCCGGCGCTCGCTGAGAAATCAGCCTCCTTGTATAAAACTGCTTCAGGGAACCTTCACAAATGCACACTCCACCACGTAGGCTAGGTGATAGGGTGCATGCACCATCACATTCTCCACCTCACTTTCTTTTTCATtgagacttttaaaaatgtgtcaaatCAGCAGTGGGCGAAAGAGGACTGACCTGTACGTGTGTGCTAGTTACGGTGTTGTATGAATGCACTGCTTTTTCTCTGTTCCAGCCATTGTAAATAGACTTCAAAAGGAAGGGATTTTTGCATTGTATCCCACCTGCTTTTAACTCCCTCTTAGCCTGAGCTATTTTCTGATTCAATGGTTCCTCTCTCCTTTCAGTTGAACACTACTTCTGCTCTGTCTTAGTGAATTGCAGAGACTATGTGAATCTGTATCATATGAAAATATGTGTAAATGCTGCTGACTCAGTCAAAGACAAATCTAAAAGAGATGTTCCCCTGTAAAGGACACCTGTCCTCCTGATTCTACCACTCTGTTCTCCCCGAGTATCTCTTGTTTCAGAGTCCTATAGCTCCTGTGGCAAAAAATCGACTCAGTTGATGTAAATTCTACCACTTCATTTTAAGGTGCGTTGTTGAATTTGATCCGGCTCGAGTCAGAAACGTCTGGAGCGCTTTGTCACTCTGGTTGACAAGAACAGACCATTTAGCATCCTATTGTGTTTAAAAGCCTAAAGTTTCAcgctttaaaaaaagtttgcttAAAAGAAATGGGTGAATGAGCTCCAACACGTTCTACGAAACAACCATGGACAGGAGTTCTTGAACGCTCCTTGATTTTTGGCTTTGCACAGAGCGGTTCAACAAGAGGAAATGGCAGGGTATGTTTCAAACCCAACACACAGGGTGTCTCGTTCAGCTCTATAAACACACGCCAGAATGTATAAAGGAATGACTGTGTGCTCTGAAGTACTTTTTGTGCTGCTTTTACCTTATctgttttcttgttgttttgcAAGTacatgtttcttcttcttttttttcatgtgttctCTTACTGCATATTAAGTATATTTCAGCCTAGCCCAAGATAACTGCAGGGAAACCAGAGGCACCCTTGCTTccaagaaagaggaaaaaaaaataagggtttACATGATAAAGAGGATGACTGGAGAACACTTTAAGACTTCAGAAAATACAGGAATACTTGGAATGTTTCAGTTGTGTGGGAGTAGGTGAGAGGATTTTTGTCAGTATTTGAAATAAACTTTTACATTAATAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104170 lncRNA downstream 127308 32867146 ~ 32894790 (-) True G77910
TU104100 lncRNA downstream 203552 32784245 ~ 32818546 (-) True LOC120562114
XR_005639695.1 lncRNA downstream 203556 32784428 ~ 32818542 (-) False LOC120562114
XR_005639694.1 lncRNA downstream 203556 32784428 ~ 32818542 (-) False LOC120562114
TU104084 lncRNA downstream 333467 32688412 ~ 32688631 (-) True G77850
TU104212 lncRNA upstream 66921 33099816 ~ 33101537 (-) True G77949
TU104222 lncRNA upstream 99348 33132243 ~ 33132533 (-) True G77959
TU104252 lncRNA upstream 252018 33284913 ~ 33286449 (-) False G77984
TU104255 lncRNA upstream 252018 33284913 ~ 33286592 (-) True G77984
TU104268 lncRNA upstream 427127 33460022 ~ 33460244 (-) True G77994
XM_039805113.1 mRNA downstream 1023 33018705 ~ 33021075 (-) True mcl1b
XM_039807109.1 mRNA downstream 75870 32915320 ~ 32946228 (-) True tmod4
XM_039805773.1 mRNA downstream 116625 32902016 ~ 32905473 (-) True lysmd1
XM_039805605.1 mRNA downstream 432052 32480644 ~ 32590046 (-) False sema6e
XM_039806160.1 mRNA upstream 82322 33115217 ~ 33130559 (-) True LOC120562448
XM_039806417.1 mRNA upstream 101215 33134110 ~ 33153043 (-) True ctsk
XM_039807321.1 mRNA upstream 263355 33296250 ~ 33299540 (-) True LOC120563172
XM_039805274.1 mRNA upstream 482799 33515694 ~ 33556965 (-) False atg5
XM_039805275.1 mRNA upstream 482799 33515694 ~ 33556763 (-) True atg5
TU104072 other downstream 588441 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 1503062 31516455 ~ 31519036 (-) True G77573
XR_005639671.1 other downstream 1625595 31239787 ~ 31396503 (-) False LOC120561969
XR_005639667.1 other upstream 557626 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 1062748 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 1097148 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 1459451 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 1941929 34974824 ~ 34977961 (-) False bcan

Expression Profile