RNA id: TU104301


Basic Information

Item Value
RNA id TU104301
length 945
RNA type TUCP
GC content 0.46
exon number 3
gene id bmper
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33826087 ~ 33879132 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACAGTCGAGCATCCATATGCCAAACGGAGCGCACATTGAGACGAGTCTACTGGAAAAACGTCCCCTACACTGACTTATCGGCAGGCAGTGAGAAGCGTTTTGAAACTCTCCGGTTGTTAtaaatcagctgtgtgtgtattattatttttttcttccatcagAGCTTAAATTACCTCGGACACTTTGGTTTGGACTCTTCTGACTGCCGGAGTTGGGGAGAAATCCTTTTCCAAATCCCAAACCTCCTCTCAGGATCCCCATACCTGCAGGATTTGggactgttttttattttttttattttatttattttaatctttaaatgttttcatccATGGACTCCTGTTTTCCGCGCACAACACGAGCAGCCCCGCTGTCTCCTGCCCGTCGGCGcgtcttttgtcattttaatgtcGCTGTAATCACCGCGCGTCTGGCTGATTGTCGCTATGCATTTCAGCGCAATCTGACAAACTGaggagtttttttattttttttcttcttccttttatCTCCTGGCTGGAATAAAGACGATACGTCTGTGGgagaaacgtttttttttttttttctcttttggatTGATTTTGTTAATTTAATTCATCCGTTTTCACCAAAACTCTGACAGTTTTTCGTGAAGAGAAGAACCCCGAggatgttgctccgctgcttGAACCCTCCCTCCTGGTCCACCTGCAGGTTTTCATTCTGCTTTTTGTTGCTGCTCCAAACGCCCGGGCCCTCCTATCCACTAATTACAGGTACCGAGGCCAGCTGTGAGAACGAAGGAGAAGTCCTCCACATCCCCAACATCACCGACAACCCCTGCATCACCTGCGTATGTCTGGAGGGGAAGGCAGACTGCAAACAGGAGAAATGCCCACTGGTCTCTGAGGACTGTGCTCTGGTGGTGAAACAGACCGGAGCCTGCTGCGAGAGGTGTAAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104275 lncRNA upstream 250820 33564020 ~ 33588256 (+) True G78000
XR_005639668.1 lncRNA upstream 250984 33583805 ~ 33588092 (+) True LOC120561935
TU104277 lncRNA upstream 320561 33515709 ~ 33518515 (+) True G78002
TU104276 lncRNA upstream 345416 33493424 ~ 33493660 (+) True G78001
TU104267 lncRNA upstream 378841 33460022 ~ 33460235 (+) True G77993
TU104334 lncRNA downstream 61881 33922993 ~ 33923230 (+) True G78052
TU104336 lncRNA downstream 77147 33938259 ~ 33938468 (+) True G78054
TU104337 lncRNA downstream 89661 33950773 ~ 33951005 (+) True G78055
TU104416 lncRNA downstream 101682 33962794 ~ 33963092 (+) True G78117
XR_005639657.1 lncRNA downstream 123737 33984849 ~ 33987987 (+) True LOC120561795
XM_039806472.1 mRNA upstream 16247 33632641 ~ 33822829 (+) True bbs9
XM_039806473.1 mRNA upstream 16247 33632641 ~ 33822829 (+) False bbs9
XM_039806734.1 mRNA upstream 210131 33605846 ~ 33628945 (+) False nt5c3a
XM_039806731.1 mRNA upstream 210131 33605847 ~ 33628945 (+) False nt5c3a
XM_039806732.1 mRNA upstream 210131 33605909 ~ 33628945 (+) True nt5c3a
XM_039805694.1 mRNA downstream 33248 33894360 ~ 33904285 (+) False LOC120562157
XM_039805693.1 mRNA downstream 33250 33894362 ~ 33904285 (+) True LOC120562157
XM_039806469.1 mRNA downstream 45278 33906390 ~ 33911214 (+) True mettl6
XM_039806468.1 mRNA downstream 55887 33916999 ~ 33919175 (+) True LOC120562644
XM_039806470.1 mRNA downstream 61466 33922578 ~ 33935943 (+) True LOC120562646
unassigned_transcript_357 other upstream 207363 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 207966 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 213074 33625931 ~ 33626002 (+) True trnap-agg_3
TU104140 other upstream 737542 33100413 ~ 33101534 (+) True G77888
XR_005639638.1 other upstream 1417604 32405133 ~ 32421472 (+) True LOC120561717
TU104327 other downstream 33260 33894372 ~ 33904263 (+) False LOC120562157
TU104420 other downstream 129483 33990595 ~ 34035967 (+) False sh3bp5b
TU104540 other downstream 668243 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 978045 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1327006 35188118 ~ 35188199 (+) True trnas-aga_7

Expression Profile