RNA id: XM_039805693.1


Basic Information

Item Value
RNA id XM_039805693.1
length 1091
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120562157
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33894360 ~ 33904285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGGATGAGTCGGTGAAGAGGCGTCGTTTGAATTTCAGTTCAttacgtgtttttgttgtgtgtgaggACTGCTTGTTCGGTTTCCAGTATTTTATAAAACATTGAACTCGGGGATATTGTTTAACATCACGGACAGACTGTATCTGGCTGCAGTAGTTCTCCTCCTGTGGTCCTGAGCTGTGTGTTGGAGGCGATGCGTCATGATGATTCATCTATTAGCCGTCGGAAGGGCAAAACCCCTCAACGCCGACCCCCGCAGCCGGCCCCAGGGCCCTCCGGTACAACATCCCGGTCCCCAAGACGGAGTGGAGCTTCAAGGCGGCCCCCCGCGTCTCCCAAGAAGAGAAGGTTTCGACCAGGGACCAGGGCCTTGATGGAGATCCGCAAGTACCAGAAGAGCACCGATCTTCTACTCAGGAAGGCACCCTTCTCTCGCCTGGTCCGTGAGGTGTGCCAGAGTTTTTCCCATGACGCTCTCCGATGGCAGGTCTACGCTCttctggccctgcaggaggCTGCAGAGGCGTTTCTTGTCATGCTGTTCTCCGATGCAAACCTGTGTGCGATCCACGCCAAGCGGGTCACGCTATTCCCCCGGGACATTCAGCTGGCCAGGAGGATCCGCGGGGTGGACAACATGTGAAAACAATACAGGACCAAGTGGACAAGCAAGCATCAGGAAGGACACTCATTTCATTGCGCTCTTTCCACTTCAGTCTGTTCTGAGACTATGATACTGCTTATAATGTGTTTAAACGGTATAACTGTTTTAAAaattttatgatttttatgCTACATTTTTTGAATTTTGGGTTACTAAATTCTTGGGAAAGGAAATAATTTGACTTGGCAGATTATCACTGGTTTTATGAAAAGGTAACAAGTTCAAGTTACCGACTTTTAACCGTCAGAAAATAATCCCTGTCAAGCAGTTGTATTTTTATACTTGAGTACTTATATTTGCATAATGTGTTAATTTTGATCCCTCAGTGTTGTATTGCTTTTGATATATAATTGATGTGTACATATTGTTCCACATTCATGTGAACTTACTTTGTTAATAAACCGCAAGATTAGTTTCTATTACGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104275 lncRNA upstream 306106 33564020 ~ 33588256 (+) True G78000
XR_005639668.1 lncRNA upstream 306270 33583805 ~ 33588092 (+) True LOC120561935
TU104277 lncRNA upstream 375847 33515709 ~ 33518515 (+) True G78002
TU104276 lncRNA upstream 400702 33493424 ~ 33493660 (+) True G78001
TU104267 lncRNA upstream 434127 33460022 ~ 33460235 (+) True G77993
TU104334 lncRNA downstream 18708 33922993 ~ 33923230 (+) True G78052
TU104336 lncRNA downstream 33974 33938259 ~ 33938468 (+) True G78054
TU104337 lncRNA downstream 46488 33950773 ~ 33951005 (+) True G78055
TU104416 lncRNA downstream 58509 33962794 ~ 33963092 (+) True G78117
XR_005639657.1 lncRNA downstream 80564 33984849 ~ 33987987 (+) True LOC120561795
XM_039806161.1 mRNA upstream 15230 33826087 ~ 33879132 (+) True bmper
XM_039806472.1 mRNA upstream 71533 33632641 ~ 33822829 (+) True bbs9
XM_039806473.1 mRNA upstream 71533 33632641 ~ 33822829 (+) False bbs9
XM_039806732.1 mRNA upstream 265417 33605909 ~ 33628945 (+) True nt5c3a
XM_039806469.1 mRNA downstream 2105 33906390 ~ 33911214 (+) True mettl6
XM_039806468.1 mRNA downstream 12714 33916999 ~ 33919175 (+) True LOC120562644
XM_039806470.1 mRNA downstream 18293 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA downstream 18298 33922583 ~ 33935943 (+) False LOC120562646
XM_039806163.1 mRNA downstream 86257 33990542 ~ 34042648 (+) True sh3bp5b
TU104301 other upstream 33250 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 262649 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 263252 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 268360 33625931 ~ 33626002 (+) True trnap-agg_3
TU104140 other upstream 792828 33100413 ~ 33101534 (+) True G77888
TU104420 other downstream 86310 33990595 ~ 34035967 (+) False sh3bp5b
TU104540 other downstream 625070 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 934872 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1283833 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1501090 35405375 ~ 35408682 (+) True G78594

Expression Profile