RNA id: TU104392


Basic Information

Item Value
RNA id TU104392
length 3679
lncRNA type intronic
GC content 0.39
exon number 2
gene id G78097
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33881005 ~ 33884726 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgttgacaagaaGAAAATGATGAACTTTTAGGTTGCTGTTCTGTAATGATTTCACTTCAAGGTTTTGGCATTGTGAGTTCAGTTTAGTCATTCCGTGGCATATAACAACACATAGCCGCTGATTAAGATTCTGCCtaatttgatttagatttctgGCATccagagtagggctgggcgatatggagaaaatcagatatcgcgatattcttgtcctaatacCTCGATGGCAATATTGTGGCGATATAGGGTTAACAAtttgtgctttaacaaaatatcttcacaatgagattttagataaataatcttcagtaatgtagatataatgactgagtgggtaaaggtaaaaataatagaAGTGCTAGAACAGGCTGGtaacacagaaaatgacatcactttactgtaatgcagcctttaaaaccaggaaaagacaacacttaagccatttacgatattacgatatccaaaatctaagaggaTATCtagtcatatcacaatatcaatacaatatcgatatattgcctagCTCTAGTCCAGAGCCACATGGAGCACATCAATGGAGCCAAGTTGCAGCTGTTAAAAGCtgcattttgtcattttgtcatCTGTTTTGTAACCATAAGGGGGCAGGAAAGACCCCAAAATCAaactcacagaaacacacatgccTGATATGTATAAGCTAATAATGTTGTGGCTAACGTGTTAGCAACagttggtctccaccaactcctgagaaaaatGTCTGGCTTCAGTTTTTGATCAGAGCGGAAGAAACTCAAACATACGGTCTGTTTGTATAGCTGGAGAATCAAAAACAATGAGCCAAAAAAAATCCCAGTCGAGCTGCACAGTCGGCTGTTATTGGCAGCGTTGCCAAAACTACATGCCCTGCGTCAAACAGACAAGGAGTTAGTAAGTTAGTAATTGGCTGCTactaatacattttcttttttcctacTCGTTCTATTGCCGTGTCACAATAAAACCCACTGACTCACAGTATAACCActtactagggttgggcattgttttgattttaacaattctgattccaattccaatTTTTAGGCTTAAGGTTATTATTAGTTCGATTACGGTTCTTActgattctcgattccgattctttgaggggtggagttgaaacaggtcacatgcttatttcacagataagaggaaaatttttttttgattcAATAGTGATTTTACAGTTTTAACGCGCTGTTTTGATGTTCAATAAAGCCACAATttagagcgctgcttactgtgctccatggctgcaacacaacgaGCACCTGGAAGTACAGTGGTCGcatacggaaaccaaaacttgcacatgttaaattTGGTACAGATGATCGGATTCAAAACCTAACTTTTctttctcgatgcccaatcctaccaCCTACAGTATCAACTTACTGATTATCTTAAAGCCCCCACAGTCGTTAATCAGTTAAAGTTTATCAAAGTTAAAAGCCTAGATTTGAGGCATCAATCATGGCGATTACGAAATTCCACATAATCCATTAATAAAAACACCTGAAACTCAAACTATACAGGGTTAAGTCTGGAAAACAGCTTTAGTATtaagagctgggcgatatggagaaaatcaagtatcacgatatttttgaccaaatacctcgatgtcgatattgcggcgatattgtagggttgactattggtgctttaagaaaatattaacacaatgaacgttttgataaataatcgccaataatgtggatacaatgactaagttgGTATGGGCAAATTATACAGTTAACagttagaacagtctggtaaattcagaaaatgacatcactttactgtaatacagcctttaaagccaggaaaagacaacacttacatatcacaatatccaaaatgtaagacgataCTTAGCCTCAAATATCCATGTTGATATAATAGCGatgtattgcccagccctatttagTATCCTGGTATTATTTTCAAAGTGACCACTATTAGTTTCATCAGTCGTCTCGTTTATTTTCCAATCAACCAGAGAACATCTTATTTTTGATCCAACGTGTTCATATAATGTATACATATATTGTAGGAGCTTCCCATGCCTTACAGCAGTAAGTCTGGACATAAAGATGAATGTGTAATTTTGTGAAAAAATGCCAAAGAGGTGAACGGCCCCTCATCATGTGCAGAGAGCAGGAGCGTTCACAGTGTAACAGTGTCACGTCGGCGTGTAAATGTTTTCATCTTTGCTTTTATCCGAGACCGTTTGAGTTGTCGTGCcttagggatcgaccgatactggtttttcGAGGCCGTTAGCGATACTGATTatcagaatgaatgaattattaatgaagccgataaccgatatttggaaccgatacgcatttacagagaaaatgaaaatctttaagtcaaaattaagatatTTGAATGTTAcacactccaacacaaaactgtgtttaaatgccttaagcaattatttaataaattagaaacgttcaacatagtctggctagtccacacagcattccgggatgggagaaaaacgtgctctggtttatcggcatttctttaaaccgatcacaatcgtcatgagcggtgctaagtgccgcacggagccacggtgcctctgctaaatagcctcgggaaggaacttgttttggtggaacgtgtacgttcaaaagttgttttagtcgcgcaagagaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcaggtaaccatagtcctcagaaatccatcggagtttaaaattacaacacaaagaaagtggaaggtgacggacatctggccgaaaaggaCACACGGCAAAATTTTCGGCAACGGAgcgatcccggaagtggaacgttgtggatatagactagtttacacataatacccagtaaaagatagtcagatagtgttgtgggcaggacattaagtcagactcagtggtgagagaAACCGAAAGGGCAGACACAGAGCTGAAgcggagccaaagtagcgcactttttaattcattaactttttcgggttatcaggcaaataaaacgccaatacagatcatctgcaaactgccgATAATCAGCCAGAGAagataatcggtctatccctatCGTGCATACATAGCGACGTCAGTGATTGTTTGTTCCCCTGACCTGCAGGAGCCGCGGGTGTTAGTGAATATCATTTGGTGCTGGTCGTACAGTATTTCATTATTAATGCAACAAAACATCCCACAAGTCAGAAACACTACCAAAGAGTTTCATCGCAAAAATGCCAAGACTTTGACTTTATTTCCATTCAGATTCACACGGTCCACTacattctgcagattttcattttggattaccgctgaaaaaaaaatctgctgaTTCCATTTGGGCCTGGTTATAAGATGCCTGTGAACTGACAAACCGCACAGCACTCGAAACCATACCAGTTTTAAGAATCCTTGATTGTTACCAGTTTACTGTGATGGTTGAAGGTCTAACTTTCCTTTGTGGTATTCCCTCTAATACATGTAACACTCTTCTGTTGTTAAATTAACTTTGTTGTATTTGGTTCTTTAGTTCTCATGTTTTTGTCTTAGTGCTACGTTCATGTGAAATGTGTTTGTACAAATATGAAGTGTATTAAAAGTGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104385 lncRNA downstream 9213 33737185 ~ 33871792 (-) True G78094
TU104399 lncRNA downstream 21788 33824695 ~ 33859217 (-) True G78101
TU104375 lncRNA downstream 160089 33720681 ~ 33720916 (-) True G78084
TU104344 lncRNA downstream 292755 33565795 ~ 33588250 (-) True G78061
TU104349 lncRNA downstream 394110 33485308 ~ 33486895 (-) True G78064
TU104409 lncRNA upstream 21694 33906420 ~ 33908885 (-) True G78110
TU104417 lncRNA upstream 78026 33962752 ~ 33963241 (-) True G78118
TU104452 lncRNA upstream 210558 34095284 ~ 34095553 (-) False LOC120561752
TU104597 lncRNA upstream 211596 34096322 ~ 34097590 (-) False LOC120561752
XR_005639652.1 lncRNA upstream 350488 34235214 ~ 34235852 (-) True LOC120561768
XM_039805277.1 mRNA downstream 278057 33590521 ~ 33602948 (-) True LOC120561932
XM_039805278.1 mRNA downstream 278062 33599029 ~ 33602943 (-) False LOC120561932
XM_039805279.1 mRNA downstream 299619 33567858 ~ 33581386 (-) True LOC120561933
XM_039805274.1 mRNA downstream 324040 33515694 ~ 33556965 (-) False atg5
XM_039805275.1 mRNA downstream 324242 33515694 ~ 33556763 (-) True atg5
XM_039806378.1 mRNA upstream 163712 34048438 ~ 34081401 (-) False capn7
XM_039806377.1 mRNA upstream 163712 34048438 ~ 34081401 (-) True capn7
XM_039804986.1 mRNA upstream 210525 34095251 ~ 34097511 (-) True LOC120561752
XM_039804976.1 mRNA upstream 244812 34129538 ~ 34132432 (-) True LOC120561744
XM_039804977.1 mRNA upstream 259448 34144174 ~ 34146909 (-) True LOC120561745
XR_005639667.1 other downstream 283700 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1447348 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2361969 31516455 ~ 31519036 (-) True G77573
XR_005639673.1 other downstream 2484502 31239787 ~ 31396503 (-) False LOC120561969
TU104595 other upstream 210917 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 245317 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 607620 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 1090098 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 1127377 35012103 ~ 35014522 (-) True G78444

Expression Profile