RNA id: TU104417


Basic Information

Item Value
RNA id TU104417
length 490
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G78118
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33962752 ~ 33963241 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaacaatgtttaatgtagcctgcagctaaatctaatcaagtaactacactaattagtatttgtctggctcacaccgtctgtagcttctaaagaattgattaggtcatggctgttatttagcatactgtaggagactcattgtccccaTAGGAAAGGTAACTTTTGTCTCTTTTAGGGGAGCCATCCCCAGACGTGATTAAGACAAAGAACGAGTATTGCTGTAGTTTGGAAACAATTGACACGTCTCGGTAAGATCCTGTCACCGGGGGTAGCCTCAAGACACTGATTGGGAACattcaccttttcttttgagagacatctgaccaatagggaaAGATTTAATTTGAAGAACCACGCAGGTACAGGAATAAATGTGGGAGCAGGAGAATGTATCAGgacttcaatctgtgacccgaAAGGGAAGCAGTTggagtccgctgtttacagtgtattgtttgtcatgtcgcatggctgctaacttgtgtcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104409 lncRNA downstream 53867 33906420 ~ 33908885 (-) True G78110
TU104392 lncRNA downstream 78026 33881005 ~ 33884726 (-) True G78097
TU104385 lncRNA downstream 90960 33737185 ~ 33871792 (-) True G78094
TU104399 lncRNA downstream 103535 33824695 ~ 33859217 (-) True G78101
TU104375 lncRNA downstream 241836 33720681 ~ 33720916 (-) True G78084
TU104452 lncRNA upstream 132043 34095284 ~ 34095553 (-) False LOC120561752
TU104597 lncRNA upstream 133081 34096322 ~ 34097590 (-) False LOC120561752
XR_005639652.1 lncRNA upstream 271973 34235214 ~ 34235852 (-) True LOC120561768
XR_005639644.1 lncRNA upstream 293418 34256659 ~ 34257473 (-) True LOC120561761
TU104629 lncRNA upstream 306154 34269395 ~ 34270001 (-) False LOC120561747
XM_039805692.1 mRNA downstream 68943 33879773 ~ 33893809 (-) True eaf1
XM_039805277.1 mRNA downstream 359804 33590521 ~ 33602948 (-) True LOC120561932
XM_039805278.1 mRNA downstream 359809 33599029 ~ 33602943 (-) False LOC120561932
XM_039805279.1 mRNA downstream 381366 33567858 ~ 33581386 (-) True LOC120561933
XM_039805275.1 mRNA downstream 405989 33515694 ~ 33556763 (-) True atg5
XM_039806378.1 mRNA upstream 85197 34048438 ~ 34081401 (-) False capn7
XM_039806377.1 mRNA upstream 85197 34048438 ~ 34081401 (-) True capn7
XM_039804986.1 mRNA upstream 132010 34095251 ~ 34097511 (-) True LOC120561752
XM_039804976.1 mRNA upstream 166297 34129538 ~ 34132432 (-) True LOC120561744
XM_039804977.1 mRNA upstream 180933 34144174 ~ 34146909 (-) True LOC120561745
XR_005639667.1 other downstream 365447 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1529095 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2443716 31516455 ~ 31519036 (-) True G77573
XR_005639673.1 other downstream 2566249 31239787 ~ 31396503 (-) False LOC120561969
TU104595 other upstream 132402 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 166802 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 529105 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 1011583 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 1048862 35012103 ~ 35014522 (-) True G78444

Expression Profile