RNA id: TU104420


Basic Information

Item Value
RNA id TU104420
length 1060
RNA type TUCP
GC content 0.57
exon number 7
gene id sh3bp5b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33990542 ~ 34042648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGAGAGCTGAGCGGTGATAGACGCTGTTGCTCGACTCCTGGCGGATACAAGCAGAGATGGTCCTCATCCAAAAACacttcttttaaaataaattaacactAGAGACATAAAGTAAGGCTCGTGAATCCGACGTGTGGTGACCCAGCTGAGACAACCGAGTCCGTGGTCTCTGTGAGTCCCGTAGTAACGTCTCTTTGTTCGGTTTGTTGACGATATATCTGCCCTTCACCTTCAACATGGATAATTCAGAGAAGGAGCTCAGGACGGACGACGACGAGGCAGAATATGAAGACGAGGAAGTGGACCCCAGAGTCCAGGGCGAGCTGGAGAAACTCAACCAGTCCACTGACGACATCAACAGATGTGAGACGGAGCTGGAGgaCGCGAGGCAAAAGTTCCGCTCGGTTCTGGTTGAGGCTACGGTGAAGCTGGACGAACTTGTGAAGAAGATCGGCAAGGCTGTGGAGGAGTCCAAGCCTTACTGGGAGGCCCGCAGGTTGGCCAGACAGGCCCAGCTGGAGGCCCAGAAGGCCACCCAGGACTTCCAGAGAGCCACGGAGGTCCTGCGGGCGGCCAAGGAGACAATCTCCCTGGCCGAGCAGAGGCTCCTGGAGGAGGACAGCCGGCAGTTTGATTCCGCTTGGCAGGAGATGTTGAACCACGCTACCCAGCGGGTGATGGAGGCGGAGCACACAAAGACGAGAAGCGAGCTGGTGCACAAGGAGACGGCGGCCAAATATACGGCAGCAATCGGCCGCATGAAGCAGCTGGAGAAAAAACTCAAACGCACCATCAACAAGTCCAAGCCCTACTTTGAGATGAAGGCGAAGTACTATCTGCAGCTGGAGaaCCTGAAGAAGAATGTGGACGAGCGGCAGGCCAAGCTGTCTCAGGCCAAAGGCGAGTATAAGACGGCGCTCAGGAACCTGGAGATGATCTCCGACGAGATCCACGAGCGACGGCGGAGCTCCACGATGGGCACCCGGGGGCGCGGCGTGGGCGCCGAGGGGGACAGTGTTTCCGGGGACGACATCTCCAGTTTTAAGATGGAGTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639657.1 lncRNA upstream 2608 33984849 ~ 33987987 (+) True LOC120561795
TU104416 lncRNA upstream 27503 33962794 ~ 33963092 (+) True G78117
TU104337 lncRNA upstream 39590 33950773 ~ 33951005 (+) True G78055
TU104336 lncRNA upstream 52127 33938259 ~ 33938468 (+) True G78054
TU104334 lncRNA upstream 67365 33922993 ~ 33923230 (+) True G78052
TU104431 lncRNA downstream 2874 34038841 ~ 34042633 (+) False sh3bp5b
TU104434 lncRNA downstream 12473 34048440 ~ 34053736 (+) True G78134
XR_005639642.1 lncRNA downstream 213062 34249029 ~ 34251208 (+) True LOC120561759
XR_005639645.1 lncRNA downstream 254795 34290762 ~ 34294584 (+) True LOC120561762
TU104487 lncRNA downstream 280844 34316811 ~ 34323014 (+) False G78180
XM_039806470.1 mRNA upstream 54652 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 54652 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 71420 33916999 ~ 33919175 (+) True LOC120562644
XM_039806469.1 mRNA upstream 79381 33906390 ~ 33911214 (+) True mettl6
XM_039805694.1 mRNA upstream 86310 33894360 ~ 33904285 (+) False LOC120562157
XM_039806542.1 mRNA downstream 48128 34084095 ~ 34088746 (+) True LOC120562692
XM_039804950.1 mRNA downstream 383940 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 383940 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 384841 34420808 ~ 34441093 (+) False LOC120561733
XM_039804954.1 mRNA downstream 573943 34609910 ~ 34622583 (+) True nes
TU104327 other upstream 86332 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 129483 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 358882 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 359485 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 364593 33625931 ~ 33626002 (+) True trnap-agg_3
TU104540 other downstream 493388 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 803190 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1152151 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1369408 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1829875 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile