RNA id: XM_039806163.1


Basic Information

Item Value
RNA id XM_039806163.1
length 3091
RNA type mRNA
GC content 0.49
exon number 9
gene id sh3bp5b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33990542 ~ 34042648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGGCTGAAGCACAGCTCTGGACATTTCAATACCGGCCTCAGTGTCAGTGGAGGGAGAGAGCTGAGCGGTGATAGACGCTGTTGCTCGACTCCTGGCGGATACAAGCAGAGATGGTCCTCATCCAAAAACacttcttttaaaataaattaacactAGAGACATAAAGTAAGGCTCGTGAATCCGACGTGTGGTGACCCAGCTGAGACAACCGAGTCCGTGGTCTCTGTGAGTCCCGTAGTAACGTCTCTTTGTTCGGTTTGTTGACGATATATCTGCCCTTCACCTTCAACATGGATAATTCAGAGAAGGAGCTCAGGACGGACGACGACGAGGCAGAATATGAAGACGAGGAAGTGGACCCCAGAGTCCAGGGCGAGCTGGAGAAACTCAACCAGTCCACTGACGACATCAACAGATGTGAGACGGAGCTGGAGgaCGCGAGGCAAAAGTTCCGCTCGGTTCTGGTTGAGGCTACGGTGAAGCTGGACGAACTTGTGAAGAAGATCGGCAAGGCTGTGGAGGAGTCCAAGCCTTACTGGGAGGCCCGCAGGTTGGCCAGACAGGCCCAGCTGGAGGCCCAGAAGGCCACCCAGGACTTCCAGAGAGCCACGGAGGTCCTGCGGGCGGCCAAGGAGACAATCTCCCTGGCCGAGCAGAGGCTCCTGGAGGAGGACAGCCGGCAGTTTGATTCCGCTTGGCAGGAGATGTTGAACCACGCTACCCAGCGGGTGATGGAGGCGGAGCACACAAAGACGAGAAGCGAGCTGGTGCACAAGGAGACGGCGGCCAAATATACGGCAGCAATCGGCCGCATGAAGCAGCTGGAGAAAAAACTCAAACGCACCATCAACAAGTCCAAGCCCTACTTTGAGATGAAGGCGAAGTACTATCTGCAGCTGGAGaaCCTGAAGAAGAATGTGGACGAGCGGCAGGCCAAGCTGTCTCAGGCCAAAGGCGAGTATAAGACGGCGCTCAGGAACCTGGAGATGATCTCCGACGAGATCCACGAGCGACGGCGGAGCTCCACGATGGGCACCCGGGGGCGCGGCGTGGGCGCCGAGGGGGACAGTGTTTCCGGGGACGACATCTCCAGTTTTAAGATGGAGTCAGACGGAATGTCCAGTGAGTACAGAAACAGTTATTCTACCTTCTCACGCATCACCGCAGGGCTCCTCAAAGTCCAGACCACGGTCCGCATCCGGACCAAACGGCAAGTCCATCCGGACCCGTCCTACACCTCGCCTTATGAATACGATACCTTAGGAAGCGTAACGCTTTCTATTTGGAAATCAATTTCTGAGCCCCCTCGCAGCAAAGATCTCCATCGCCTCGACCTGAAGCTCCCCCAGTTCTTTCATTTCCTCCCccttccctcttcctcttcctcctccgccCCCCTTTTCCACTCTCCGCCCTccactcccccctcccccccgtcTCCTCTTTCGAGGCCCTGCAGCCTGGACCTGCCCAGCACCGTGTCGCTGTCCGACTTCGGCCTCATCTCGCCGGTGCTCGGGCCTCGCAGCGAGTGCAGCGGAGCGTCGTCGCCAGAATGTGACCTGGAGAGAGGTGACCGGGCAGAAGGTGCAGAAGGGGATCTGGACAACGCCCCGgcctccaacaacaacaacaactccacTCCAAGCACAAAGAAGAGCTTCAGCCTGGAGGCCCGCTTCAGCTTCCTCAACCTGCGCCGCCCCCGCACCGACAAAAACACGGACAACTGTTCCCAGAAGGCCGCAGCCGGGCAGACTCTGGTCTTGGTCAAAGGTGTCTAAGGACCAAAAAGAGGATTTTGACCCAAACTTTCTGATAAACAGCTGTTTATATAAGCTACCTGGCACAACTGCACTCCATTTAGAAACTCCACAGTCAGAGAGAGACTTTGAATGTCACAGTTGGTGAATATAAAGTTTCCTGTACATCTTGGCAAGTGTTGTTACTCCCATTTCCTTTATGGACATTGCACCTTTTGGACTCTCATGCCTGAGAAATAAAGACTGAATGCTGTTGTGTTTCAAATGTGTCGGTTAAGGGGGATGGAATAAAAAGATGGTTAGAAATGATTCATGTTcatatttgtttgttatttttccaCTAAAAGCTGGAAAGCCTTCTGTCGCAAAAGTACATTAGCTGTCTGAGAATGGCATCTATGAAATAAATGGGTTGGTGTAACTGTTTATCAAAATTAAGAATTCATTACTGTTAAATAGCACTTGGCATACTGTAAACCATGCAGAGGTGATGTTAAAGGAATCTTATGTGAAAATGTTCAATAAATAACTGGTCTCTTAACCTGCTGTACACTCCTGTATTTGATATGTAATGGTGTATTTTCTGAAgttatgtatgtaaatgttcaGGTTTAGGCACTGTGGACCCtccaatgtccaaaaaaagctgtttatttttcatataaagTATAATTTAATTTTTGCCACCATGATGATTGTTTAAAATGTACGTCTATCTGTTGCAAACACAGCAAAGTTATTGATATATACACAAAAAATGTGGCCTTTCGATAAGTCCCATTGCAGGTAAAAATAGAAATAGCTGCATGTAATTACTTACGACCAAATGTAAAGAATGACTTAAGTGTTTCACAGCCCTCTATAGTTTAAAGCGAAACGATTgcattgtttatttgtttaggtGAGGAGGAATAATGTAACAAAATGTTCCCTGAAGTTTACCATCAAAAGACCTAAACCAACAAAGAGTCAGCGCATCTCTCGACTTCCCTACTCCAAGCCCATTGGGTCCCGCGGAAGATGTACATGAAAGGTTGAGATTGTACAAAATGATGAACATCTGCCTAATCCGCATTATAGTAACAATTGTGAGGAAAGGTTCTTTCTTCAGtctgtgtattatgtgtgtgaacAAAATGTGATATCTGCATATTTCCATATATCTGTCACTTTTTGATGTGGAATTTAGGACAAGAACCCCCCCCAACCAGCCTGCCCTCTCATAACTATGTGTGCAGTTGGTGTTTAGTCCTCTGCATCGTCTCTCAGCAGCTAACGTGCCTGTTTTTCAGATGAAGAGTTAAATAAACGGATGTTTGCTTCATT

Function

GO: NA

KEGG:

id description
K23739 SH3BP5; SH3-domain binding protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639657.1 lncRNA upstream 2555 33984849 ~ 33987987 (+) True LOC120561795
TU104416 lncRNA upstream 27450 33962794 ~ 33963092 (+) True G78117
TU104337 lncRNA upstream 39537 33950773 ~ 33951005 (+) True G78055
TU104336 lncRNA upstream 52074 33938259 ~ 33938468 (+) True G78054
TU104334 lncRNA upstream 67312 33922993 ~ 33923230 (+) True G78052
TU104434 lncRNA downstream 5792 34048440 ~ 34053736 (+) True G78134
XR_005639642.1 lncRNA downstream 206381 34249029 ~ 34251208 (+) True LOC120561759
XR_005639645.1 lncRNA downstream 248114 34290762 ~ 34294584 (+) True LOC120561762
TU104487 lncRNA downstream 274163 34316811 ~ 34323014 (+) False G78180
TU104490 lncRNA downstream 274163 34316811 ~ 34324359 (+) True G78180
XM_039806470.1 mRNA upstream 54599 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 54599 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 71367 33916999 ~ 33919175 (+) True LOC120562644
XM_039806469.1 mRNA upstream 79328 33906390 ~ 33911214 (+) True mettl6
XM_039805694.1 mRNA upstream 86257 33894360 ~ 33904285 (+) False LOC120562157
XM_039806542.1 mRNA downstream 41447 34084095 ~ 34088746 (+) True LOC120562692
XM_039804950.1 mRNA downstream 377259 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 377259 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 378160 34420808 ~ 34441093 (+) False LOC120561733
XM_039804954.1 mRNA downstream 567262 34609910 ~ 34622583 (+) True nes
TU104327 other upstream 86279 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 129430 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 358829 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 359432 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_355 other upstream 364540 33625931 ~ 33626002 (+) True trnap-agg_3
TU104540 other downstream 486707 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 796509 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1145470 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1362727 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1823194 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile