RNA id: TU104434


Basic Information

Item Value
RNA id TU104434
length 5194
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G78134
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34048440 ~ 34053736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCGGATATCATTTTTATGTATTCAAAGTTTGAAGACGTCAGTGTACCCAACATTTAGCGCAAGCTCTGCAAACATTACATCATCACTCATACAACAGGTTGCTGCAAGATTGTCCTGCTTCATATTGAAATTAGTCGGCTTGCTGccaattaaaaatacataactGAGTTTGGTAACAGAAAAGATGGCATTCATAAAAATAATGATTGATCATCAATCAGCGATTGGATATTTGACAGAAATACTTGGCAAAGTACATATATTAAAAGCTATATTCCTTCCTGAACAGAACATTTCACCCTTTTAGAACACCAGCGTGTATAGTCCATTTACAGTCGTCAGCACTAAGTTTACTATGAGTTATTGTTAACAGTAGTTATGAGTTATGAGTGAAAACAGTCACCGTGCTCCCCAGAAGCATCACTATGAAGTTCATCACATATATCATTTGCATTGAATAAATGTCTACAGTAGTGAGGCAAGTTCTCTTTGCACTGTGTGTTGACAACTAAAAGAAATTGAATGATTGTAAAACAAAGCCAATGCTTGAGGTTAACAtgataaaatcataaaaaaaaaaaaaatctgattatattgtgaaaatgtttttgtaataGTGTCCTCATTCAGTGCACAGTGCCTGGTTGATGCAGACTGCATTGAGTCAAATATACAGGCCGCAGCGGAGGGAAAACAAATTCATAATGTAGTCGATTCATCGAATAGTCGAACAACGAAAAAATATATTAACAactttgataatcaattaatagtttaagtcatttatcaagcaaacatgcaacaccaaaaaaaataaaaaataaaaaacattactgGTTCCAGGTCCAGAAATGTCTTTTACATTACACACTGTAAATTGCATATTTTATAGTTTTgcactgttggtcagacaaagcAAAGTGGAGATGTAACCTTCGGCTCTGTGACCGTTtgagggacatttaaaaaaaaaaaatttaaataaaaaataaacattttatacaacaCAAACTGTAGaatgaaataataatttgtGGCAGTCAGACTGTTGGGCTTTACAGTTGTGGATGGCGCTCCGTAAACACAGAAAGACTCAAGCCTCAACGCTGTGTAGCCGGCTGTACGCCGCAGTCAGCGTCACTATCGAACTTCCATGTAAACATTTGCATATAAACGCCTTTTGCAAAAGTGTCTTTGTCACTGACTTTTCATTTGAATTTTTCAGAAACGGAAAACAAACTCCGGTTTACTTCAGTGTGACGTTGGCTGACTGCTTCCACAAAACCTCGACGTTCATTTGAACACATTCTGCCGTCGCTGGATCCGCCGCAGCGCGCCCTTCGACTGCtacagacttctttttttttttttgccaaggaATTTGTGATGCAACTGCACAGCATTAGCTAGTTTTGCAGAGATAAGCGGCACCGAATAGAGCAGCAACATTCGTACATGACCGACTGCTGATGGGTGAAACTGTccacaccagaaaaaaaaaaaaaaatcttgataTCTGAAAAAGGGTTAAACTGCTTGTGTTGAAGAAACAAAGACATATTCATTTCCATATATTGTTTGACAATACAcatgagaaatgttttttttttttaaaagtgcagtaaaaatcaattaaaaaaagtaaaccGAGGATGTGTACTGggtattacatttacatttcaaccTGCAGAAGGTTTATGGTGAcaatcaaaaacacacagacggCTGTCTGAAGCCGAGTGCCGACATGAAATGAGGCCGATATCTCATCCCTCGGCCGTCACATCCACAGACGTGAAGAAAAACGAAGAGACATCATTCAACTGCTGCCGTACTGGGTTCCCTGtgttgctgctctgctgcactgCTCCTGAGAAtggaccaaaaaaataaaaaataccttCACGGTCATTTAAGGAAAATAACTGTCCCCTTCCACCGCGCAGACATTTAAACAGCTTTTAATAGGTTTGGCCGAGACTCCAGACTATTCAACTCTAGGTCACGTATGGCGCTTTttcattacatggtacctgctcgactctactcgccttttcgCATTAGTCTGGTCAGGGTGAAGGAGCGCAATAATTACAGAGAGGGACTGAGAATCCACAGTGGCGCcgctgaaaaataaagttttgtaATCATGGCTGCGAGTGTCAAGccacttcctttttttaaaatcacgTCGTTTTTGCAGCAGTGAGCATCTCAAGCACCAGTTCATTTCCCATTCTGTTAATTAAAAGAGGTTAGTTTTGATAAGCCACGGCAAACGTCCAGGCTCCACAACAAAGAGTTACCACTGGAGCTCTGAAGAATAATCAATTCATTGTCAACTTTGAAACGAATCGCCAACAATCATAACCGATTAACCGAATTCTCCGACTCCAGCTTCTAAAAGTCTGTATTTTCACTCCTCTATTACAGTCAACTGAATATCATTGAGTAAGGGGCCCAACGAGACATTCGAGGACGCCATCTTGGGCTTTGCAACGACATTTTTCGCcactttatagaccaaacaactaatcgattaatcgagaaaaataGTCGGCAggttaatcgacaatgaaaataattgtgagttgcagccctagttattaTGAGCCTAAGttgtatttatttctttgtGGTTTCTGGtttattatcttattttattgtatttatatcTTGGGACAGCTTGATTTCTGCAGCAGTTCTTTATTTTTGGCTTTCTGTAGAGAAGTGATATCGTGACTGATAACCACAGTTAAAGTCACAGCCAGGAAAGCCATCCCGCTAGTTTTCCCCTCGGCAGGGTCGCGCGTTATTCACAACAGACAGCTGTCATTTCAAACTGGCTATGATTGACGGCACTGTCTTTTTCCGGAGACATCATCACGATCATCATCCCCTTCCTTCACCTGCCTGGATGGACGCGTCGCTCGCTGGGCTCCAACTGatctaataaaaaacaaacaggaaacgTTTTGTCCAATTTCATCTATCTCAACTAAGATCCACAGCTTTGCCAAAAAGTATGTGGACATcctaaggcctcctgcacactggctgcgtggcgcgagcgtgtcagctgcgtggcgtgtccgttttttatttcggctcccatgttaacaggttagagcttacacactgcctgcgtgacacgcgcgTCTCAGGCACGGCCGAAAACgagtgcctgctagaaatagaaccgcaagcgtgttggaagcatttccaggttaaaatagaatacgaaaagatgtttatatgtcgtttagacacaaatacatttaataaatgacatgttgatgtttgaaagtctctagctttgacataaatgcagatataaatgtaatttaaaagacaaaaactaaataattatcgattttcaaatattgcacctgtcaatacagaacgaaatattctggagcctattttgccgtcaatactgccgacgtttctggtgtgcaaagacatagaaaacgccacgcagccgccacgcaactgacacgcaacagaaacgccgcgctcacgccacgcagccagtgtgcaggagctcTAACAGTCCACCCATGTGTGAACATTAAACATGCCATTCTTAAGCCGTAGGCATTCATCTGCTGCTAGAGCAGCCTCCAGTCTCGTGGTTTCAGCTCTTTCCATCAGATGTTGAACCTGCTGCAGGGACAAGAGCATCAGTGAGGTCCAAATGAAGCTGGGTCATCAGGTGTGGCTCATGGTGGATGAGTTTGAGTTTAAGGCTGGACGGACTATTTCTTTCACACCAAACTCTGTGAACTATTTCTTTACGGAGCTGGCTTTGTGCATTGGGGGGGGCATAGTCATGTTGTAACAGGAAAGGGACAAACGCAAACTGTTGACCCAAAGTTGGAAGAACACGGTTCTTGAATCAAATTGTATACTGTAGAATAAAACTCTTTTGCAACTGGAATTAAGGGGCCCAAACCATGAAATAGTATGTGGACAGATGTTCTCCCAGTACTGTGAGGAACTTGCTTTCCCTTTGCGATGAAAACAGATCTCCAAACGGCCATAACATTTGTGAAATTCCAAGCAGGACCAAGTACTAAGAACATTGTTCTGGATGGTTGAGGCGTTGGTTGCGGCGAAACAGAACCTGAAAAGAAGTGGCTGCTGTCAGGCAGCTTCAAAGCCAATTCTTGCAGCTCACAGCTGGTGGCTAGTGTTCATTTTTAAACCCTGTTACACCTCCGCATCCCGTCGAGTCCAGGACATAGTCCTACGATTGCGGTCATCTCCTGAGACCAGATTTAACCGTCTGATCAGAACAATGATGTCGATGCTCCATAGAAACGCTATCCATCTTATAGACCCAAGGTTTGAACGGTTCCGGAAGTGATTTTTGCCCGTTCAATTGCTCCATTGatgtttcattaaatgcttgcatgaagagttttaagcctggaaACAAGCCATCCAGCTCCGAGATGGAtctttatcataaaacatttgattcagcgcaaaaaaagaaaaaacattctgaaaacagaaaaaaggcaaacctacaagactgtgtacagaaACGACCAAAAGGCTTCCATTGTAGCAGCTCACTAGCCGCTCATGGTGGTAGGGttaacatttccatggtaacagcgagCGCCACAATTTAGAGTTGTCGTTATTACGCTTaagattgtgggtagtgtagtagtTCTCCATGACATAGCGaatgaaacatgtttttcttaaaacaggGTCGATTTCATACAGACTTACGGCTTCTACAGGAGCAAAAGCTTTCGTTTCATAATCTCGGAGccattatggctgataatcataatgcttatggagaaaatgaatggcatTTTCACTTcaggaaccacactgttgagctctctgtcactattggcgcttacccactgctagtaccagctcggCTCGGCTCTGCTCGGCTCGACCcggccgcggtgccccgtcctccattttccattgcagatttagtactgCCTCATGCGTGAGCCGAGCGtaggctggtcgtcatagcgatgccgcaggaaactgccgtgacctaacgcgacacacacgtCGAAGGCGTGTTGTTTTTGCctctcggcatgtggctgtttgccacagccagaagaccccttttgtttcaaaagaaactggaggcagcaaaaaaactatttataaatttcgggtttgttcaggaccccccccgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104431 lncRNA upstream 5807 34038841 ~ 34042633 (+) False sh3bp5b
XR_005639657.1 lncRNA upstream 60453 33984849 ~ 33987987 (+) True LOC120561795
TU104416 lncRNA upstream 85348 33962794 ~ 33963092 (+) True G78117
TU104337 lncRNA upstream 97435 33950773 ~ 33951005 (+) True G78055
TU104336 lncRNA upstream 109972 33938259 ~ 33938468 (+) True G78054
XR_005639642.1 lncRNA downstream 195293 34249029 ~ 34251208 (+) True LOC120561759
XR_005639645.1 lncRNA downstream 237026 34290762 ~ 34294584 (+) True LOC120561762
TU104487 lncRNA downstream 263075 34316811 ~ 34323014 (+) False G78180
TU104490 lncRNA downstream 263075 34316811 ~ 34324359 (+) True G78180
TU104495 lncRNA downstream 263075 34316811 ~ 34323014 (+) False G78180
XM_039806163.1 mRNA upstream 5792 33990542 ~ 34042648 (+) True sh3bp5b
XM_039806470.1 mRNA upstream 112497 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 112497 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 129265 33916999 ~ 33919175 (+) True LOC120562644
XM_039806469.1 mRNA upstream 137226 33906390 ~ 33911214 (+) True mettl6
XM_039806542.1 mRNA downstream 30359 34084095 ~ 34088746 (+) True LOC120562692
XM_039804950.1 mRNA downstream 366171 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 366171 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 367072 34420808 ~ 34441093 (+) False LOC120561733
XM_039804954.1 mRNA downstream 556174 34609910 ~ 34622583 (+) True nes
TU104420 other upstream 12473 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 144177 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 187328 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 416727 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 417330 33631039 ~ 33631110 (+) True trnap-agg_4
TU104540 other downstream 475619 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 785421 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 1134382 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1351639 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1812106 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile