RNA id: TU104452



Basic Information


Item Value
RNA id TU104452
length 270
lncRNA type sense_over
GC content 0.37
exon number 1
gene id LOC120561752
representative False

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34095251 ~ 34097590 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTTAAACACTGCAGTCAGACTCTGCATGATAATATCAACTGGCTTATAAATAtcacatgtgtgtttgtgctctgtgtgtttctctctgcatCTTTGTTAGAGATGCAGTGATTAAAGGTTTTATACCAGATTGATGAAAGGGAACAACTTTTTTAGGATGTAGGAAGGATGGCTTTTTTGCACAAGTATAGAAAATTAACCCTGTGCTTGTTTTGTCTCTGTTGTAACTCTTGCAGCAATGTCTCCCTGTGACAAAAACGAATTTCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104417 lncRNA downstream 132043 33962752 ~ 33963241 (-) True G78118
TU104409 lncRNA downstream 186399 33906420 ~ 33908885 (-) True G78110
TU104392 lncRNA downstream 210558 33881005 ~ 33884726 (-) True G78097
TU104385 lncRNA downstream 223492 33737185 ~ 33871792 (-) True G78094
TU104399 lncRNA downstream 236067 33824695 ~ 33859217 (-) True G78101
TU104597 lncRNA upstream 769 34096322 ~ 34097590 (-) False LOC120561752
XR_005639652.1 lncRNA upstream 139661 34235214 ~ 34235852 (-) True LOC120561768
XR_005639644.1 lncRNA upstream 161106 34256659 ~ 34257473 (-) True LOC120561761
TU104629 lncRNA upstream 173842 34269395 ~ 34270001 (-) False LOC120561747
TU104638 lncRNA upstream 174727 34270280 ~ 34271012 (-) False LOC120561747
XM_039806378.1 mRNA downstream 13883 34048438 ~ 34081401 (-) False capn7
XM_039806377.1 mRNA downstream 13883 34048438 ~ 34081401 (-) True capn7
XM_039805692.1 mRNA downstream 201475 33879773 ~ 33893809 (-) True eaf1
XM_039805277.1 mRNA downstream 492336 33590521 ~ 33602948 (-) True LOC120561932
XM_039805278.1 mRNA downstream 492341 33599029 ~ 33602943 (-) False LOC120561932
XM_039804976.1 mRNA upstream 33985 34129538 ~ 34132432 (-) True LOC120561744
XM_039804977.1 mRNA upstream 48621 34144174 ~ 34146909 (-) True LOC120561745
XM_039804978.1 mRNA upstream 68242 34163795 ~ 34172230 (-) True LOC120561746
XM_039804985.1 mRNA upstream 77215 34172768 ~ 34188410 (-) True LOC120561751
XM_039804973.1 mRNA upstream 116779 34212332 ~ 34219024 (-) True LOC120561742
XR_005639667.1 other downstream 497979 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1661627 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2576248 31516455 ~ 31519036 (-) True G77573
XR_005639673.1 other downstream 2698781 31239787 ~ 31396503 (-) False LOC120561969
TU104595 other upstream 90 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 34490 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 396793 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 879271 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 916550 35012103 ~ 35014522 (-) True G78444

Expression Profile