RNA id: TU104490


Basic Information

Item Value
RNA id TU104490
length 1934
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G78180
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34316811 ~ 34324359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtttgagattttaaaccaaagtctggtctttgagcatttattatattttgcaaaatatgagaatacagattcaaaggtacatgcagtacaactgaatgagcattactaaactaaaatctaaacatcacatcatcatatagtcaaaacctctctcaagccacccctctaactttatcttttagcctggTCAGAGTTGAAAATAGGACATCATTAGAAGTCAACCCATCCttaccttcccctctgctcctgttcttttcattagcctaaacaaccctttatctcaggaggcagaaggaaaCATGGTTTTGTGGCCTTCTCTACTTTGTCagctaaaaagttaaacaaaatgagaagctagagtttcttaaacaaaaaccactaggctaagagttcatggctgctgctgtccctctctggcctttaagagtctaagaggaaggaacagcatttttgtggaggtttaaaacaatctttaagcaaatggttataatcattaatcaataatggttaaaataaaatttgccaccacagtccacccttttgattacaacataatcacacaaaataaattttactttaaaaattcaAACCTTATTTCTTAAAGATTCAAACATCAAACATATCTtagaattaatcacaaaattcaACCTTTACTTCTTAAAGATTCAAACTTATGGATATAATTGTCTATTGCTGAAATGCCGTTTTTTAAagaggtacaaaaaaaaacctttttaattgTAGCAAGCGTTCACGTctaagtaaaaataataaaacaaaaaattttaATCAGTCTCACACAGTATCAGAAACAGTATCCAGAACCTCATCATCATATCTGGACATACGAAACAAGTCAGAGGACTCAGTATTCTGAAGTGCCTGATACTGTATcatatttaccatgaagatggaGGAAATCATTTTCTTGACTAGTGGGATTATGCAGCATACACAGATCAGGAAACCAAACATCAAAGTTATTAGTGGTGCAATAAATCTAGCTAACCAAGCCTTCCACCCCCCTTGAAAAACCCAGGCCCACCAGTCCCATCCTGCATAGTGTTCTGGGACGTCCTGTGCTTTGAGATTAGTCAAAAGTAGGTTCAAGTGGTGAATGGtgtcagtgatgtttcctgaaaTGTCTGGAATGAATGTGCAGCAGTGTGTGCCTATTATGTGGCAAAGTCCCCCCTGTGCTGCTAGCAATAGGTCCAATCCCATCTGATGTTGCATTAGCATGTTTCTCATAGCTCGCATAACAGGAGGAAATTCTCCAAACCCTGAAATCATCATAGCAGTCAAATTCTCAAGACTTTCCTGAACCTGATCaatattatgtgcattattTATTGTTCCATACCAAGGAAAAAACCCTGCTGCGAATTTAGTTCCTGGGCTGGTAACCTCTCGCTTATCTCTAGCCGAAACATCAGATGTGGGCACGTACATGGGATAGTGGTGTGTTGTATGCACAAGGGAAGTCATAACTGTAATGGAAGGTGTCAAATATATCATACTACATCTTCCTGCCCATCGTGAAGTCAAAATCTGATACCAATGGTCTCCACAGAGCCAAACATAATCCACAAGAGACCCTGCGCCAGAATCATCAGGCCAACGCATGGTGTGAGTCAAAGATGGTATCAGTACTGAAGCACTAAGATACCCTGGTGTGGAGTGTAAGCATGCACTAATATTTCATAAGGCTATGGTGAAACTGTCCTATACTATCAGATGCTTTTccatttttagttttaaaaatagtacCATTCGGAGCACGCACAGTGCGATTCGCAAAACCTCCACAAGGTGAAGGTTGAATAAAAGCCGAATAGAACTGACCCCCCTCCTCTCTAACATCCTTGAGTGCTGTCAGAGCACAGACAACTTCTGTGAGATTCAATGTGTGTGGTTTTACTGGGGTAGCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639645.1 lncRNA upstream 22227 34290762 ~ 34294584 (+) True LOC120561762
XR_005639642.1 lncRNA upstream 65603 34249029 ~ 34251208 (+) True LOC120561759
TU104434 lncRNA upstream 263075 34048440 ~ 34053736 (+) True G78134
TU104431 lncRNA upstream 274178 34038841 ~ 34042633 (+) False sh3bp5b
XR_005639657.1 lncRNA upstream 328824 33984849 ~ 33987987 (+) True LOC120561795
TU104500 lncRNA downstream 18155 34342514 ~ 34345393 (+) True LOC120561758
XR_005639641.1 lncRNA downstream 18167 34342526 ~ 34345230 (+) False LOC120561758
TU104533 lncRNA downstream 144547 34468906 ~ 34469457 (+) False G78195
TU104534 lncRNA downstream 144547 34468906 ~ 34469457 (+) True G78195
XR_005639650.1 lncRNA downstream 178514 34502873 ~ 34505357 (+) True LOC120561766
XM_039806542.1 mRNA upstream 228065 34084095 ~ 34088746 (+) True LOC120562692
XM_039806163.1 mRNA upstream 274163 33990542 ~ 34042648 (+) True sh3bp5b
XM_039806470.1 mRNA upstream 380868 33922578 ~ 33935943 (+) True LOC120562646
XM_039806471.1 mRNA upstream 380868 33922583 ~ 33935943 (+) False LOC120562646
XM_039806468.1 mRNA upstream 397636 33916999 ~ 33919175 (+) True LOC120562644
XM_039804950.1 mRNA downstream 95548 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA downstream 95548 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA downstream 96449 34420808 ~ 34441093 (+) False LOC120561733
XM_039804954.1 mRNA downstream 285551 34609910 ~ 34622583 (+) True nes
XM_039807294.1 mRNA downstream 627693 34952052 ~ 34964798 (+) False hapln2
TU104420 other upstream 280844 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 412548 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 455699 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 685098 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 685701 33631039 ~ 33631110 (+) True trnap-agg_4
TU104540 other downstream 204996 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 514798 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 863759 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 1081016 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1541483 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile