RNA id: TU104534


Basic Information

Item Value
RNA id TU104534
length 494
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G78195
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34468906 ~ 34469457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgttggtctgtgtggtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtctgtgtgtgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtctgtgtgtgtctgtctgtctgtctgtctgtgtgtgtggtgtgtgtgtatgtgtgtgtgtgtgtgtctgtgtgtgtctatctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggtctgtgtttgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104500 lncRNA upstream 123513 34342514 ~ 34345393 (+) True LOC120561758
XR_005639641.1 lncRNA upstream 123676 34342526 ~ 34345230 (+) False LOC120561758
TU104490 lncRNA upstream 144547 34316811 ~ 34324359 (+) True G78180
TU104487 lncRNA upstream 145892 34316811 ~ 34323014 (+) False G78180
TU104495 lncRNA upstream 145892 34316811 ~ 34323014 (+) False G78180
XR_005639650.1 lncRNA downstream 33416 34502873 ~ 34505357 (+) True LOC120561766
TU104541 lncRNA downstream 59898 34529355 ~ 34544379 (+) True G78200
TU104566 lncRNA downstream 165298 34634755 ~ 34658151 (+) True G78219
TU104750 lncRNA downstream 369700 34839157 ~ 34856532 (+) False LOC120562567
TU104751 lncRNA downstream 369700 34839157 ~ 34856532 (+) False LOC120562567
XM_039804950.1 mRNA upstream 27813 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA upstream 27813 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA upstream 27813 34420808 ~ 34441093 (+) False LOC120561733
XM_039806542.1 mRNA upstream 380160 34084095 ~ 34088746 (+) True LOC120562692
XM_039806163.1 mRNA upstream 426258 33990542 ~ 34042648 (+) True sh3bp5b
XM_039804954.1 mRNA downstream 140453 34609910 ~ 34622583 (+) True nes
XM_039807294.1 mRNA downstream 482595 34952052 ~ 34964798 (+) False hapln2
XM_039807292.1 mRNA downstream 482595 34952052 ~ 34964134 (+) True hapln2
XM_039807293.1 mRNA downstream 482595 34952052 ~ 34963856 (+) False hapln2
XM_039807365.1 mRNA downstream 573764 35043221 ~ 35058363 (+) True rrnad1
TU104420 other upstream 432939 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 564643 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 607794 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 837193 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_356 other upstream 837796 33631039 ~ 33631110 (+) True trnap-agg_4
TU104540 other downstream 59898 34529355 ~ 34544379 (+) False G78200
TU104752 other downstream 369700 34839157 ~ 34856532 (+) False LOC120562567
unassigned_transcript_361 other downstream 718661 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 935918 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1396385 35865842 ~ 35888172 (+) False LOC120562279

Expression Profile