RNA id: TU104649


Basic Information

Item Value
RNA id TU104649
length 702
lncRNA type sense_over
GC content 0.33
exon number 2
gene id LOC120561737
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34316812 ~ 34323015 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCATTTCAGCAATAGACAATTATATCCATAAGTTTGAATCTTTAAGAAGTAAAGGTtgaattttgtgattaattctaAGATATGTTTGATGTTTGAATCTTTAAGAAATAAGGTTtgaatttttaaagtaaaatttattttgtgtgattatgttgtaatcaaaagggtggactgtggtggcaaattttattttaaccattattgattaatgattataaccatttgcttaaagattgttttaaacctccacaaaaatgctgttccttcctcttagactcttaaaggccagagagggacagcagcagccatgaactcttagcctagtggtttttgtttaagaaactctagcttctcattttgtttaactttttagctGACAAAGTAGAGAAGGCCACAAAACCATGtttccttctgcctcctgagataaagggttgtttaggctaatgaaaagaacaggagcagaggggaaggtaaGGATGGGTTGACTTCTAATGATGTCCTATTTTCAACTCTGAccaggctaaaagataaagttagaggggtggcttgagagaggttttgactatatgatgatgtgatgtttagattttagtttagtaatgctcattcagttgtactgcatgtacctttgaatctgtattctcatattttgcaaaatataataaatgctcaaagaccagactttggtttaaaatctcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639640.1 lncRNA downstream 40679 34274239 ~ 34276133 (-) True LOC120561757
TU104606 lncRNA downstream 40683 34274437 ~ 34276129 (-) False LOC120561757
TU104638 lncRNA downstream 45800 34270280 ~ 34271012 (-) False LOC120561747
TU104629 lncRNA downstream 46811 34269395 ~ 34270001 (-) False LOC120561747
XR_005639644.1 lncRNA downstream 59339 34256659 ~ 34257473 (-) True LOC120561761
XR_005639646.1 lncRNA upstream 2384 34325399 ~ 34328950 (-) True LOC120561763
TU104662 lncRNA upstream 16343 34339358 ~ 34339743 (-) False LOC120561748
TU104678 lncRNA upstream 69936 34392951 ~ 34393367 (-) True G78298
XR_005639647.1 lncRNA upstream 123047 34446062 ~ 34446510 (-) True LOC120561764
XR_005639651.1 lncRNA upstream 133731 34456746 ~ 34473775 (-) True LOC120561767
XM_039804980.1 mRNA downstream 43160 34261526 ~ 34273652 (-) True LOC120561747
XM_039804979.1 mRNA downstream 49035 34261526 ~ 34267777 (-) False LOC120561747
XM_039804973.1 mRNA downstream 97788 34212332 ~ 34219024 (-) True LOC120561742
XM_039804974.1 mRNA downstream 97788 34212907 ~ 34219024 (-) False LOC120561742
XM_039804985.1 mRNA downstream 128402 34172768 ~ 34188410 (-) True LOC120561751
XM_039804981.1 mRNA upstream 16162 34339177 ~ 34340981 (-) True LOC120561748
XM_039804983.1 mRNA upstream 37041 34360056 ~ 34363807 (-) True LOC120561749
XM_039804987.1 mRNA upstream 41432 34364447 ~ 34369142 (-) True LOC120561754
XM_039804971.1 mRNA upstream 46676 34369691 ~ 34380293 (-) True LOC120561739
XM_039804989.1 mRNA upstream 63397 34386412 ~ 34386929 (-) True LOC120561755
TU104595 other downstream 170516 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 184706 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 719507 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 1883155 32425397 ~ 32433657 (-) False LOC120561540
TU103756 other downstream 2797776 31516455 ~ 31519036 (-) True G77573
TU104706 other upstream 169331 34492346 ~ 34493195 (-) True G78321
TU104838 other upstream 651809 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 689088 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 810649 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 811976 35134991 ~ 35135062 (-) True trnap-ugg_1