RNA id: XR_005639792.1


Basic Information

Item Value
RNA id XR_005639792.1
length 2641
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC120562567
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34839157 ~ 34856532 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAATAATGGGGATGATAATAAAGCAGAGGGGGGAAAACCCGTCCGAGGGAAGCTGAATGGATGGAGCCAGAGAGACGTCACAGCCAGCCGCAGCCATGAAGACTGAGCGCTCCAGCCTCCGGAGGCTCAGTCGCTCTCCATCTCCCCAGCTGCTCGCTCCCTCGCTCggctcttcttcttttttttggagaGCGGACGCCGCGGCGACTCGCAGACGACGGCggATCCCTGGAGAGACACTCAGCGGCCTCACAACACGTGGCTTACTGCCAGAACTTGGGCCATGTCCCTTTGCCTGCGGCTTGAGAGGATGGGTAGCCTTAGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGATGTACATTCTTCATAAAGCTAGATAACCGAAAGTAACAAGAATCCCATTACACTCCTGAAAAGGCATCAAGACCCCAAACGGGCcaccctcaaaaaaaaaaagaacagactGCAAGAACAAGAACTGCAACACCAGAGAAGAAGACGGACGACGTTTAAAAGGAGACGTGGGGCGGAACGCAGCAAAAGGCTACCAACCACACCACCACTGAAGGGAAGCTGGCAAAAAAGgagactgaaaaacagagaagaaggaggaggaggggttgCTGTTGATTCTGCCCTGCCTCTCTCCTCGCCCTCCTCTGCATCgcctcttccctcctcctcctaatcctcctcccttcctcctccgcTCCATCCTCAGCCGACTGCCCCCTTTTTCCTGTACAGCGAGACGCAGCCCCGCGCCACCATCTTAGAGCAACGCTGGCATGAAATGGAAGTGGGGAAGACCAGTCGGTGCAGGTGGATGATTTGTCGGCGTGCCCAAGGGGGATCCGAAACGGCCAGAGCGGACGAAGAGGAGGGACAGCAGCTTCTCCTCCGTTTGCCGTCTTTCCGCCAGGACTGAAACGGCGACGGCGCCGACGTCTGCACGCGCTTCCCGCCGTGACTTTGGGACATCGCCGCGCCGTTCGTACCTCGACGCGTTATTTGACCCAAGCGGGACtgagcgaaaaaaaaaaaaaaacgtccacGGCTGTGGGAAACGAAAGGCTCAGACAGAAGATCAGCAGCTTTTCCGGTGCGGACAAACTGGTCCCGTAAATGTTGTGACTCTCGAGGGTGTGGCACTTGATTTTGTAATTCTCCTCCTTATGTGTTCTATCCTCCATGTGAAGAATATCACTTAAGACATGAAGCGATGTGGTGTGGCTTCAACTGACCATAGGCTTGACTCGTAGGTTCATTTGAATGAGTTGTAGCCCACGTTTTGTTTGATTCCTGTTTTTGTTATATAGTTGCTAGGACTCGGAGACACGTGAATGTGAGACCCACGGCAGCAGTGAATAAATACTGCACTGCGATTGGACGGCTCCGTGTGTCGGCTGACACAATGGCGAAGGAATGAGCTGTCGTCTTTATACTCTATGCAActgttttatcttttatttcattttatttttggtcTTGGATCTCCTTTCATCATtgggatttttatttttgggctACCAGTTTTACAGATATTCCTTCAGACATCATGAAGAGAAATGGTTTTATAAAAAGGAGCCTACTTTCTCCCGGTTTGTTAATATACTGCTACAGAAATGACagtcagtgagtgtgtgtgtgtgtgtgtgtgagtgagtgcgtGACAAATGACACAATACAGCTCAGTTTCACATGCATTTTGGAGCTCATATTCGCAGCCTTAACAGACTTTGATTCGCAGCCGTGAGCCACAGTCTGAGTAAACGGGCGACCGCACGTTTGATATTCCTGATGGCAGGAGCGTGTTTGATCAGCAGGAAGTGGCAGAGCCAGGGCTCATGGCGGCGAGTGTACAGAACACGCCGCGCTATTAAAACCTTCCCCCGGCgctgtctggaacgcagcagcTTGGTTCAGTTACCTGCGTCGCTGTAACGATCTGTCGTTTGGGTGAGACATGATAAATACATTGGCTTCAAACACCGCCTTAATTTCCTGTCCTTGACAttaacacacgcacgcacacgcgcacacacacgcacacacgtgcCCAAACGTAATAAAGCAAGTACTATCGCAGCCTAATTCATTCTATATTAATTTTCGGGAAGTGGCAATTTTTTTATTACGATTGATAATCTATGCAAATCTTTTAAATATTACTTTAAACAAGCTTGCGTCTATGCAGTGCTTTTGCGATTGATTCGAGAGGAGACTATCTTGGTTCTAATTTAGAAAATGTATTCTTTTGATAATCATGCACATCCCAGTGCTCGAGACAATTACTCATCTGCCTGGATAAGCttgaaattatgtttttaatcttaagcaaaaaaaaaataaaaaataagtcacTCCTCTGATATCAGTCCAGAGGCATGAAAACCATGAATTGTGGTCTAAAATGATTAAATTGTGCTTGCACtaaatctgttgttttttttcccccccttaaATGCAGATCAAAGCTATCTATTCAGCTTATTGGCGTATTGTTTTATACAAGCAGCAATGTTTGTGTTATGCAATCTAAATCGCTGTGATGAGTGTTCACCGCATGTGCCTTTGTATGGAAAACTGTGTTAGTAGTAGTAATAAAAAGGTTTACATTGAAaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104566 lncRNA upstream 181009 34634755 ~ 34658151 (+) True G78219
TU104541 lncRNA upstream 294781 34529355 ~ 34544379 (+) True G78200
XR_005639650.1 lncRNA upstream 333803 34502873 ~ 34505357 (+) True LOC120561766
TU104533 lncRNA upstream 369703 34468906 ~ 34469457 (+) False G78195
TU104755 lncRNA downstream 57832 34914357 ~ 34918069 (+) True G78366
TU104847 lncRNA downstream 174383 35030908 ~ 35031135 (+) True G78440
TU104947 lncRNA downstream 312387 35168912 ~ 35173203 (+) True G78488
TU104979 lncRNA downstream 350406 35206931 ~ 35207166 (+) True G78516
TU104981 lncRNA downstream 373926 35230451 ~ 35230899 (+) True G78518
XM_039804954.1 mRNA upstream 216577 34609910 ~ 34622583 (+) True nes
XM_039804950.1 mRNA upstream 398067 34419907 ~ 34441093 (+) True LOC120561733
XM_039804952.1 mRNA upstream 398067 34419907 ~ 34441093 (+) False LOC120561733
XM_039804951.1 mRNA upstream 398067 34420808 ~ 34441093 (+) False LOC120561733
XM_039806542.1 mRNA upstream 750414 34084095 ~ 34088746 (+) True LOC120562692
XM_039807294.1 mRNA downstream 95527 34952052 ~ 34964798 (+) False hapln2
XM_039807292.1 mRNA downstream 95527 34952052 ~ 34964134 (+) True hapln2
XM_039807293.1 mRNA downstream 95527 34952052 ~ 34963856 (+) False hapln2
XM_039807365.1 mRNA downstream 186696 35043221 ~ 35058363 (+) True rrnad1
XM_039807366.1 mRNA downstream 188777 35045302 ~ 35058363 (+) False rrnad1
TU104540 other upstream 294781 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 803193 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 934897 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 978048 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_357 other upstream 1207447 33631642 ~ 33631713 (+) True trnap-agg_5
unassigned_transcript_361 other downstream 331593 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 548850 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 1009317 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 1281234 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1437462 36293987 ~ 36350995 (+) True G78772