RNA id: TU104798


Basic Information

Item Value
RNA id TU104798
length 1704
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120562743
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34869387 ~ 34888246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGTCCTGGGGGGTCCTTATTATTAGTTgagcagaagcagcagctggTTGGTGGTTTGTCTCATTGTCTGGACAGTTCGGACAAACTCAAACATGATGGCGAGATAAAGAAAATGCTGCAGAGTCAAACTTCAACACGGCAGAGGCCATCTTTAGCTTCAGTTCCTCTGGAGTCGCGTCTGTTCCCAACCGTGTCTCTTTCATCCAGCGGAGACGCCTTCAGACGAACTCACCTGGAGTCCCActAACCTGGAGCTACGCAATTTGACTGAACAGAACTGAACTGAAGAACATGAACATCTTGCGCGGCGATGGGTTGATGACCACATGAATCCCAACTCAAAGTCCAAGACGTTTTTGAAGAGGGTTGAATCACACTAGCTGCCTCTTTATGGACCAGCCTCCCGTCCTTTTTTTGACACCACCTTCCCCTGGGTGGCCTTTGTTCAACTCTCGGGGTTGAGTCCAAGGAAGCGCCTAAAATGTAATAACAGAGGAAGCCTGTAAGATCTCAGGTGTGGTGGGTTAGGGTTATTTGCACTTAATACAGAACCACATCACATTTACTAAATAAACATTCAAATATGTTTTCTCATGAAAATGACCTCTGTGTCTTATAATCATGAGAATATATATTACATAACTTGTAGAAGTTATTCTATAATAATGAGCAACTAAATATCATTACAACAGACACGTTGTTAACATTATGACAGCATTTGAGTTGTTTACTTCAAATTCATTTTGAACCATTAGGTTCAAGCAGTGTTAATCAGACAGCTTTTTGGTCTTTGGTCTTACTAAAgtacaaacataaaaataccAACAACAATGCCATTCTTCAATTATTTTAGAACGGTATTTGcatctaaaataaatataatataaataatgttcTGACCTCAAATGATAATGCcatatacattaaccaaaggtACCAATGGATCCCAATTAGTCACATCGAggaagaaataaaagcaaattAAACAACTGGTACGACACTGGTAACAGGGTTTAGCTAGCCTACTAGCTAACGATAACGTGGCTACAAAACATTAGGGTGCAtgcttgaaaaaaacaacaaccagttAATACAATGCAAATTCAACCCACAATAACAAATCAGGGTCCAGCTGGATTTGATAGGAACACATTTACCTTGTTAAATTACCTTTAGGAGCAGTACGGCTGAGGATGTGCCATGTGTAGTATGTGAGTAGGCGATGCGCATCATCAACTTCACAATCGGGGCAAAAGTTCTCtaatttctctctttctcttcttattttttttgtacttcttTGTATTAAATCTGCTTGCTGTTTGGTTTGTTCTCGTTTGGCTATGTCAGTGGATTGCTTACCGCTGTTCTGTGTTTGCCTGTTCCTGTTTTTGGGGTTCCTACCTGCTCCtggttttttgtattttgcctGTTCCAGTTTTTGGATTTTGCCATTACACCTTTGAACACTACACTGCCTGCTGCCTCTGCAATTGGGTCCACCACATTCTCTGGAAGACCGTAACAGTGTAACATTATATTTTTCCGATTACTCTCTTCATGAAGTGGTGTGGACTTGATGCCACATGATTTTTAAAGAGCTGTGGGCGGACTCAACCTGGctactgaaaaagaaaaaagtactgTAGTATACCGTAAAATTGCACAGTAGCTTGCTGTTAATATTTTGTTCCTCAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104789 lncRNA downstream 19363 34844289 ~ 34850430 (-) True G78389
XR_005639643.1 lncRNA downstream 310246 34558496 ~ 34559547 (-) True LOC120561760
XR_005639653.1 lncRNA downstream 375034 34493956 ~ 34494759 (-) True LOC120561769
TU104702 lncRNA downstream 400275 34468899 ~ 34469518 (-) True G78318
TU104808 lncRNA upstream 22112 34910358 ~ 34910573 (-) True G78406
TU104857 lncRNA upstream 139132 35027378 ~ 35027581 (-) True G78446
TU104859 lncRNA upstream 142396 35030642 ~ 35030846 (-) True G78448
TU104861 lncRNA upstream 158681 35046927 ~ 35047141 (-) True G78450
TU104862 lncRNA upstream 165040 35053286 ~ 35054192 (-) True G78451
XM_039806770.1 mRNA downstream 59944 34807830 ~ 34809849 (-) True LOC120562852
XM_039804957.1 mRNA downstream 91200 34634741 ~ 34778593 (-) False mef2d
XM_039806234.1 mRNA upstream 26075 34914321 ~ 34932785 (-) True rhbg
XM_039806235.1 mRNA upstream 26075 34914321 ~ 34931719 (-) False rhbg
XM_039806164.1 mRNA upstream 87254 34975500 ~ 35004333 (-) True bcan
XM_039807368.1 mRNA upstream 145637 35033883 ~ 35043980 (-) True isg20l2
XM_039807367.1 mRNA upstream 145637 35033883 ~ 35043175 (-) False isg20l2
TU104706 other downstream 376598 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 723497 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 737687 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 1272488 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 2436136 32425397 ~ 32433657 (-) False LOC120561540
TU104838 other upstream 86578 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 123857 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 245418 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 246745 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 247844 35136090 ~ 35136161 (-) True trnap-cgg_2

Expression Profile