RNA id: XR_005639817.1


Basic Information

Item Value
RNA id XR_005639817.1
length 2061
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC120562743
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34869387 ~ 34888246 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGTGGTTTGTCTCATTGTCTGGACAGTTCGGACAAACTCAAACATGATGGCGAGATAAAGAAAATGCTGCAGAGTCAAACTTCAACACGGCAGAGGCCATCTTTAGCTTCAGTTCCTCTGGAGTCGCGTCTGTTCCCAACCGTGTCTCTTTCATCCAGCGGAGACGCCTTCAGACGAACTCACCTGGAGTCCCActAACCTGGAGCTACGCAATTTGACTGAACAGAACTGAACTGAAGAACATGAACATCTTGCGCGGCGATGGGTTGATGACCACATGAATCCCAACTCAAAGTCCAAGACGTTTTTGAAGAGGGTTGAATCACACTAGCTGCCTCTTTATGGACCAGCCTCCCGTCCTTTTTTTGACACCACCTTCCCCTGGGTGGCCTTTGTTCAACTCTCGGGGTTGAGTCCAAGGAAGCGCCTAAAATGTAATAACAGAGGAAGCCTGTAAGATCTCAGGTGTGGTGGGTTAGGGTTATTTGCACTTAATACAGAACCACATCACATTTACTAAATAAACATTCAAATATGTTTTCTCATGAAAATGACCTCTGTGTCTTATAATCATGAGAATATATATTACATAACTTGTAGAAGTTATTCTATAATAATGAGCAACTAAATATCATTACAACAGACACGTTGTTAACATTATGACAGCATTTGAGTTGTTTACTTCAAATTCATTTTGAACCATTAGGTTCAAGCAGTGTTAATCAGACAGCTTTTTGGTCTTTGGTCTTACTAAAgtacaaacataaaaataccAACAACAATGCCATTCTTCAATTATTTTAGAACGGTATTTGcatctaaaataaatataatataaataatgttcTGACCTCAAATGATAATGCcatatacattaaccaaaggtACCAATGGATCCCAATTAGTCACATCGAggaagaaataaaagcaaattAAACAACTGGTACGACACTGGTAACAGGGTTTAGCTAGCCTACTAGCTAACGATAACGTGGCTACAAAACATTAGGGTGCAtgcttgaaaaaaacaacaaccagttAATACAATGCAAATTCAACCCACAATAACAAATCAGGGTCCAGCTGGATTTGATAGGAACACATTTACCTTGTTAAATTACCTTTAGGAGCAGTACGGCTGAGGATGTGCCATGTGTAGTATGTGAGTAGGCGATGCGCATCATCAACTTCACAATCGGGGCAAAAGTTCTCtaatttctctctttctcttcttattttttttgtacttcttTGTATTAAATCTGCTTGCTGTTTGGTTTGTTCTCGTTTGGCTATGTCAGTGGATTGCTTACCGCTGTTCTGTGTTTGCCTGTTCCTGTTTTTGGGGTTCCTACCTGCTCCtggttttttgtattttgcctGTTCCAGTTTTTGGATTTTGCCATTACACCTTTGAACACTACACTGCCTGCTGCCTCTGCAATTGGGTCCACCACATTCTCTGGAAGACCGTAACAGTGTAACATTATATTTTTCCGATTACTCTCTTCATGAAGTGGTGTGGACTTGATGCCACATGATTTTTAAAGAGCTGTGGGCGGACTCAACCTGGctactgaaaaagaaaaaagtactgTAGTATACCGTAAAATTGCACAGTAGCTTGCTGTTAATATTTTGTTCCTCAAATGCctcaatatttacagtattccACTGTATTTAGGAAAAATTACTGTAAGAAAAATCCTGTATTTCTACGGTAGTTTGTTACAGTGAACGTATCCCTAAATATTAAGTGATAAACCTTCAGAGCTCTGGTTTTCTCACCAAAGGAACATTTGCTCCTTTGCAGGCTCAGAAAATTCACCAAAACCGGAATGTAATTAAAATATAGTCGTACCCTTTAGAAAACACAGATCGGTCAGACTAAAGAGATGTCTGTGTTTCGGTATTTGtgtaaattaaacattttatccGTACAAGAGTTTCACCAAGCAGCGGTATGCTTCATATAGTGTCCTATTGTATTAAAAAATACTGATTTAGATTTACTAAAAGACATTCTCCCAGTCTTGCCGCTGCCTCCACCCCTGGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104789 lncRNA downstream 18957 34844289 ~ 34850430 (-) True G78389
XR_005639643.1 lncRNA downstream 309840 34558496 ~ 34559547 (-) True LOC120561760
XR_005639653.1 lncRNA downstream 374628 34493956 ~ 34494759 (-) True LOC120561769
TU104702 lncRNA downstream 399869 34468899 ~ 34469518 (-) True G78318
TU104703 lncRNA downstream 400009 34468899 ~ 34469378 (-) False G78318
TU104808 lncRNA upstream 22161 34910358 ~ 34910573 (-) True G78406
TU104857 lncRNA upstream 139181 35027378 ~ 35027581 (-) True G78446
TU104859 lncRNA upstream 142445 35030642 ~ 35030846 (-) True G78448
TU104861 lncRNA upstream 158730 35046927 ~ 35047141 (-) True G78450
TU104862 lncRNA upstream 165089 35053286 ~ 35054192 (-) True G78451
XM_039806770.1 mRNA downstream 59538 34807830 ~ 34809849 (-) True LOC120562852
XM_039804957.1 mRNA downstream 90794 34634741 ~ 34778593 (-) False mef2d
XM_039806234.1 mRNA upstream 26124 34914321 ~ 34932785 (-) True rhbg
XM_039806235.1 mRNA upstream 26124 34914321 ~ 34931719 (-) False rhbg
XM_039806164.1 mRNA upstream 87303 34975500 ~ 35004333 (-) True bcan
XM_039807368.1 mRNA upstream 145686 35033883 ~ 35043980 (-) True isg20l2
XM_039807367.1 mRNA upstream 145686 35033883 ~ 35043175 (-) False isg20l2
TU104706 other downstream 376192 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 723091 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 737281 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 1272082 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 2435730 32425397 ~ 32433657 (-) False LOC120561540
TU104838 other upstream 86627 34974824 ~ 34977961 (-) False bcan
TU104853 other upstream 123906 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 245467 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 246794 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 247893 35136090 ~ 35136161 (-) True trnap-cgg_2

Expression Profile