RNA id: XM_039806164.1


Basic Information

Item Value
RNA id XM_039806164.1
length 4702
RNA type mRNA
GC content 0.54
exon number 15
gene id bcan
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 34974824 ~ 35004333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgttcaaggaagtCAGACTGGAAGTGTCCCTGCCTGTGCTGCTGTGCGCCATCTGTCTCCTCGTCCGGCCGTCGTCCTCTACCCACCACCAGGAGTCAgCTTGCTTCTCCTCAGATGACTCGAAGCTCCTCCAGGTGACCATCCCTGCCGCCCCGCCTGTGGCCGCTGTGCTGGGCGGCTCTTTGACGTTACCCTGCCTGGTGTCTCTGGCGCACCCGCCGCCTTCCCCCTCCACCAACGGCCGCCACGCCGTGCTGTCCCTCCCGCGGGTCAAATGGAGCGTGCTGACTCACGGCCGGGAGGCGGAGATCCTGGTGGCGCGCGGCGACAGGGTGCGAGTCAGCGAGGCTTACAAGGACCGAGCCTCGCTGCTCCATTACGCCTCGTCCCCCGCCGACCTCACGCTGCGGCTGGATAGCCTGAGGCAGAACGACACCGGCTTCTACCGCTGCGAGGTGCAGCAGGGCCTGGAGGACGCCGACGACGTGGCTCAGGTCAAAGTCAAAGgggtGGTTTTTCATTATCGTGATGCATCCAGCCGCTACGCCTTCACCTTTGAGCGAGCCCGAGAGGCCTGCAAGGAGATCGGGGCTCAGATTGCCACTCCGGAGCAGCTCCAGGCTGCCTACCACAGCGGATACGAGCAGTGTGACGCCGGCTGGCTCTCAGACCGCTCAGTGAGATATCCCATCCAGATGCCAAGAGAGGGCTGTTTTGGGGACATGGATGGATTGCCGGGAGTGAGAAACTATGGCCTGTTAGAGCCTGATGAGCTGTATGATGTCTACTGCTACGTGGAGAATATCGATGGTGAGGTGTTCCATGGCTCCGCCCTCCAGCGCTTCAACTTCTCGGAGGCCAAGGCCTACTGTCTGAGCCACGGCGCCGAGCTGGTCACCACGGCTCAGCTGTACGCAGCCTGGAGCGACGGACTGAACCTCTGCAGTCCGGGCTGGCTGGCAGACGGGAGCGTGCGCTACCCCATCGTCACCCCCAGAGAGCGCTGTGGAGGCGGCGAACCCGGGGTCCGAACTGTCTATCGCTACAGCAACCAGACGGGCTTCCCCGAGGTTCACACTCGACACGATGTCTACTGCCTCAAAAGCAATAACGGCGCTTACACAGAATCTCCTCAGGATTTCCTCGCCACTAAACCAGAGAACATTGGCCAGGACATTGTTTTCTTAACTAATCCTGCGGAGGAGGAGTTTGGGCGGGGCGAGGCGACGGCAAAGGAGGGCGAAGAGGTCCAACGTCCCCGCACGGCCAATCCTGTACAGCAGAGCCACATGGAGGCTCAGGCCGTCACATTGAGTTATGACAAGCAACCATTCACGGTAGACATTCGTGAGTCTGTCCAAGACGGCGACAACCCAGACGCAGATCATGACGAGTCTCACACGTTTCCAACAACTTCTCCAAAGGCAGATGGTGGGGTAACAGTCGATGAAGACTCCACTTCACCCGCAAATGATTCAATTCCAGCGAGCGCAGAGCCCTCAGAGCATCATATTTCTGTGACTGAAAGCCTCGGAGAGACAGCTGTTAATACAACATCTGGAGCTGATGCAAGCGAGCTCCTCAGCAGCTCTCCGGAAGTTCCTCAGGAGGGCGACCTTCCTGTTCTACAAGAGGACCACACTACAGATGCTCACCTGGATCTCACTTCTGAAGCCCAGCACGTCTACTCGAGCACATCCTACGAGGTCTCTGGGCAGCCAGAAGAGGCCAGCGCTGGTTCTGCCGAGGAGATATCAGCGGCGACGTTTTCACCCCACACCGAGGAAACGGGTGTTTACTCGACCGCCCCGCTGCTGCCGTCTTTTGATCACAGTACGCCTGAGAACCATCAGGCAGAAGAGGAGTCTGGAGAGGAGAGTGTAAACCCTCTTCTAGATGAGGCAACACAAACGCCAGTGACTCAAAGTTTGGTTGGCATGGACACCTCTGCCCCCTCTGAACTGGCCCCTAGGTCTGGTTTAGGTTATGATCACATCGCAGAGCCCTCAGGTGTAGCCGTGGAGACGTCCCCCCCGGTCCGGCACGATGATGAGGACTCCAGCAGCACTTCACAGGAGACCGTTTCAGACGATCCAACCGACCACAGCGGACACGTTGACCCTGCAGAAACCCCGACAGCAGAGGCCTTCGCAGTCACAGAGGACTCCAGTGTAAACGCCCCGGTCCTGAACAGTGATCCCGTCACCTTTTTGACATCGCCTGCGTCTGTAACCCCGTCCCTTCCTTCTGTGGAGGTTGAAGCCAGTGCCCCAGAGATTACAACCTTCATACCCAAAAGCGACACTCCATCTGGGGCCGATCCTCTGGTCGAGATCCAGGACAAACTCGAAAGGGAGGTATTAGGAGAAAGCCCAGAGGTATTCTTCAACAAAACCCCAAATATCACAGACAGTGATCCGGAGGGGAGGGAGCAAGGTTCAAGAGAGGGATTGGGCGAATCGTCAGGAGGAAGCGCAGAGCTGACAAATCCGACTCTGTCAACGGACCACAGGTCTGCGGGAACGGACAGCGAGGATGCCACTGAAGCCAGCTCCCCAGAGATTATAACCTTCATACCCGAAAGCAACACTCCATCTGGGGCTGGACCTCTGGTCGACATCCAGGACAAACTCGAACGGGAGGTATTAGGAGAAAGCCCAGAGGTATTCTCCAACAAAACCCCAAATATCACAGACAGCGATCCGGAGGGGAGGGAACTAGATTCCGGAGAGGGATCGTTTGAATCGTCAGGAGGAAGCGCAGAGCTGACAAATCCGACTCTGTCAACGTACCACACGTCTGCGGGACCGGACCGCGAGGATGCCACTGATGCACCTCATCCAGCAGATGTAAAAATCACGCTGATCCCTCATGGGAGGGGCTGGGAACCAGAGGCTTCTTCTTCGTCCTCCACAGCGCAGGAGTCTCGCTCCGAACTGGAGTACAGCGCAGAGCCTCCTGTGGCTGATGGATTTGAAGACGTCTCTAAGGAGCCAGAAGTCGTGACTGAGATCCCCACCAGCGGCATCACTGAACATGGATCATCAGAGGGCGGTGCAGGGAAGACCAGCACGGAGGAGCCTTCAGTTAAAGTATGCACATGGCATCCAGATAATGAGGAGGAACGCTCCGGTCCGACGCTCAGCAGCGACGGCAGTGACGTGACAATCACCGCTCCCCCCGCTTTCCCAGAGTACTTTGCCATGGCTGCCAAAGTTTCTGCTGCAGGACCAGGAGGCATttcagCTGCAGACTCCTGCCTGGACAACCCGTGTTTGAACGGAGGCACTTGTGTTGACGGGGAGTCACCGAGCTGCATGTGCTTACCCGGTTACGGAGGAGACTTGTGCCAGAAAGACCTGGAGGTGTGTGAGCCCGGCTGGGAGAAGTTCCAGAGCTTCTGCTATCATCACTTTTCCAAGCGGCAGAGCTGGGAGGCGGCGGAGCAGCACTGCCGCATGTGTGGCGGACATCTTCTTTCCGTCATGACCCCCGAGGAGCAGGACTACAtcaacgaaaaaaaaaaacggggtactttggaggaccgCACGGGGTACCTCTACGAGAACTGGTTCAGAGGGCAGCCTGACAGCTACTTCCTGTCAGGCGAGGACTGTGCGGTGATGGTGTGGCACGACGGCGGCCGCTGGAGCGACGTGCCGTGCAACTACCACCTCTCGTACACCTGCAAGAAGGGCGTCTCATCGTGTGGCGAGCCCCCCAAAGCTCCCAACGCTAAGGTGTTTGGGAAGAAGCGGTTGCGTTACGAGACCAACACCAAAGTGCGGTACTACTGCGAGGAGGGCTTCGTGCAGAAGCTGAACCCTGTAATCAAGTGCCTGCCCGGCGGCCGATGGGAGGAGCCTCTGATCACCTGCATCCCAACCCATTCGATGGAAGAAGACTCAGTGACCTCACTTCCTCTCCAGCACGAGGAGGTCACGGGCACGGCCACAGAGAAAGCAGCGCCGCGGTTCTGGGACATTAAGTGGAACGTCTGAAGCCattctgcctttttttctttaaaaaaaaaaatatttcacctCCTCTTTTCCCCAATTTTCGTGTGTCTTAAAAGACTTTCCAGTCCATTATAGTAAGTTAAACTGTAGAAATCTAATTTTTCATATTAAAATCATCTCAAGGCCACAGTTCCTACAGTCCGGAAAAACGTGCTTTAATCcaaatacttgttttttaaagtgAGCTTAAAGTGAATTTGGacagttgataaaaaaaaaacctgaatgGCTCTTAATTTAGAGATTCCTGAAAAACAATGGCACCCAAAATAGCTTTCATATAAAGCAGTTATATCAAGAGATAAGAGAGGATCCTCCACACTGTTCCAACACTCAACAGTGGGCTTTTATCAGCAGACGACCATTTGATTCAACATCTATCTtccttttattcttttttttttttttttatctccggACACTTTGTAAGACCCTCTCTTATCTTCTGTCTTTCACACAGAAGGAAAACTGTTATGCAGGACAACATGTTTTATGTGAGATGGTCATATAAACGACCTGGAATCTAATTAACAAAATGCATATGAATCCTGACGTTTTCTTTACAACTCATTTATCAACATCAACATCAGAATATGTCAATATTTCAGAGACACTTGTTATTAATCCCGTTAATGTATCAGTCTGTGAGACCCTAAATAaaccaaattaaataacagTA

Function

GO: NA

KEGG:

id description
K06795 BCAN; brevican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104808 lncRNA downstream 64927 34910358 ~ 34910573 (-) True G78406
TU104798 lncRNA downstream 87254 34869793 ~ 34888246 (-) False LOC120562743
XR_005639817.1 lncRNA downstream 87303 34869387 ~ 34888197 (-) True LOC120562743
TU104789 lncRNA downstream 125070 34844289 ~ 34850430 (-) True G78389
XR_005639643.1 lncRNA downstream 415953 34558496 ~ 34559547 (-) True LOC120561760
TU104857 lncRNA upstream 23045 35027378 ~ 35027581 (-) True G78446
TU104859 lncRNA upstream 26309 35030642 ~ 35030846 (-) True G78448
TU104861 lncRNA upstream 42594 35046927 ~ 35047141 (-) True G78450
TU104862 lncRNA upstream 48953 35053286 ~ 35054192 (-) True G78451
TU104863 lncRNA upstream 53635 35057968 ~ 35058870 (-) True G78452
XM_039806234.1 mRNA downstream 42715 34914321 ~ 34932785 (-) True rhbg
XM_039806235.1 mRNA downstream 43781 34914321 ~ 34931719 (-) False rhbg
XM_039806770.1 mRNA downstream 165651 34807830 ~ 34809849 (-) True LOC120562852
XM_039804957.1 mRNA downstream 196907 34634741 ~ 34778593 (-) False mef2d
XM_039807368.1 mRNA upstream 29550 35033883 ~ 35043980 (-) True isg20l2
XM_039807367.1 mRNA upstream 29550 35033883 ~ 35043175 (-) False isg20l2
XM_039807372.1 mRNA upstream 68625 35072958 ~ 35088429 (-) False LOC120563201
XM_039807376.1 mRNA upstream 68626 35072959 ~ 35088416 (-) False LOC120563201
XM_039807373.1 mRNA upstream 68626 35072959 ~ 35088416 (-) False LOC120563201
TU104706 other downstream 482305 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 829204 34095643 ~ 34146296 (-) True G78245
TU104620 other downstream 843394 34130043 ~ 34132106 (-) False LOC120561744
XR_005639667.1 other downstream 1378195 33590521 ~ 33597305 (-) False LOC120561932
TU104072 other downstream 2541843 32425397 ~ 32433657 (-) False LOC120561540
TU104853 other upstream 7770 35012103 ~ 35014522 (-) True G78444
unassigned_transcript_358 other upstream 129331 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 130658 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 131757 35136090 ~ 35136161 (-) True trnap-cgg_2
TU104958 other upstream 169533 35173866 ~ 35177239 (-) True G78496

Expression Profile