RNA id: TU104847


Basic Information

Item Value
RNA id TU104847
length 228
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G78440
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35030908 ~ 35031135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatagagccagcatatctccaccagactccatgtaaataattaggacttttagcgtgtatagagccagcatatctccacaagtaaatgggtgaattaagagtttatttcaaccaaaccagagtggtgattgttggaacggtggaaagacgaaccaagatggcttttggtagttttatttattttctgtcgactttgagtgaagtgtgttttacgatgaaaaaataact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104755 lncRNA upstream 112839 34914357 ~ 34918069 (+) True G78366
TU104751 lncRNA upstream 174376 34839157 ~ 34856532 (+) False LOC120562567
TU104947 lncRNA downstream 137777 35168912 ~ 35173203 (+) True G78488
TU104979 lncRNA downstream 175796 35206931 ~ 35207166 (+) True G78516
TU104981 lncRNA downstream 199316 35230451 ~ 35230899 (+) True G78518
TU104982 lncRNA downstream 201011 35232146 ~ 35232446 (+) True G78519
TU104987 lncRNA downstream 208902 35240037 ~ 35240487 (+) True G78524
XM_039807294.1 mRNA upstream 66110 34952052 ~ 34964798 (+) False hapln2
XM_039807292.1 mRNA upstream 66774 34952052 ~ 34964134 (+) True hapln2
XM_039807293.1 mRNA upstream 67052 34952052 ~ 34963856 (+) False hapln2
XM_039804954.1 mRNA upstream 408325 34609910 ~ 34622583 (+) True nes
XM_039804950.1 mRNA upstream 589815 34419907 ~ 34441093 (+) True LOC120561733
XM_039807365.1 mRNA downstream 12086 35043221 ~ 35058363 (+) True rrnad1
XM_039807366.1 mRNA downstream 14167 35045302 ~ 35058363 (+) False rrnad1
XM_039807369.1 mRNA downstream 28324 35059459 ~ 35071390 (+) True LOC120563199
XM_039806534.1 mRNA downstream 88298 35119433 ~ 35127711 (+) True snrnp48
XM_039806533.1 mRNA downstream 97979 35129114 ~ 35168180 (+) True zgc:113232
TU104752 other upstream 174376 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 486529 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 994941 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1126645 33894372 ~ 33904263 (+) False LOC120562157
TU104301 other upstream 1169796 33839076 ~ 33861112 (+) False bmper
unassigned_transcript_361 other downstream 156983 35188118 ~ 35188199 (+) True trnas-aga_7
TU105077 other downstream 374240 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 834707 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 1106624 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1262852 36293987 ~ 36350995 (+) True G78772

Expression Profile