RNA id: TU104956


Basic Information

Item Value
RNA id TU104956
length 943
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G78494
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35125489 ~ 35128229 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttattagagaggaaagctgagatacgaaaggggaggggggacatacaggtcggattcgaaccctggaccttctgcatcgaggaataCACCTCTGCACGtgtgcacccgctctaccaactgagctaaccagcGACAGTTGGAGTCATTTTGTATGAATAAAGAGTAAAAATtctgtgatgtcagcttgttaaatgtgaatattgttctagtttattctctcctctgtgacagtgaactgaatatctttgagttgtgaacaaaacgagacatttgacgACATcttcttgggctttgggaaacactggtccacatttttcaccattttctgacattttagagaccaaacaacaataatcaacagattaatcgagaaggaaaataatcgttagttgcagacATGGAATTACACTGTAAAAACTGAGAAGCTTTTAAAAAAGCAGTAGTATTAAAACATGATATGAAAAGaatattttagattttaaaatGGTGTTTGTGAAGCACAAAAAGCTCAAAAATGTTGATGTTGCTGGTTCCCAAAACTTTATTCCCATTTATTTATCTCCCCTTGTTTATAATCTTAAAATGTTGTGACACCTGACATCTTCTGACCCGTAGGAGCCACAATGACCTTTGACCTCATCTGATCTGTTGTTGCTGATCCAGCACTAGcacttctccctctcctctttctttttctttttcttcttcttgcggTCGTGGTGGTGGTCATCAGGAGAACGGGAATCCctctccctcttcttcctcttcttcttgctctctctgtctttgcttCGCTCTCGGCTGCGATGGCGTCTGCTGTGGGAGTGGCGAGACTCTGACGACAGCGACCGCCTCTCATCCAGCCGACGCCTTTGGGAGGAGAGTTCAGATCTCGTCGATtcgtcctcctcttctctccactGTCTGCTGAGCTCCTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104951 lncRNA downstream 5113 35119467 ~ 35120376 (-) True G78491
TU104891 lncRNA downstream 36010 35089213 ~ 35089479 (-) True G78459
TU104863 lncRNA downstream 66619 35057968 ~ 35058870 (-) True G78452
TU104862 lncRNA downstream 71297 35053286 ~ 35054192 (-) True G78451
TU104861 lncRNA downstream 78348 35046927 ~ 35047141 (-) True G78450
TU104968 lncRNA upstream 53131 35181360 ~ 35181929 (-) True G78506
TU104971 lncRNA upstream 57449 35185678 ~ 35186487 (-) True G78508
XR_005639880.1 lncRNA upstream 100448 35228677 ~ 35232021 (-) False LOC120562928
TU105030 lncRNA upstream 102524 35230753 ~ 35231667 (-) True LOC120562928
TU105031 lncRNA upstream 103463 35231692 ~ 35232182 (-) False LOC120562928
XM_039807202.1 mRNA downstream 14813 35102976 ~ 35110676 (-) False sri
XM_039807199.1 mRNA downstream 14813 35102976 ~ 35110676 (-) True sri
XM_039807203.1 mRNA downstream 14814 35102976 ~ 35110675 (-) False sri
XM_039807201.1 mRNA downstream 14814 35102976 ~ 35110675 (-) False sri
XM_039807198.1 mRNA downstream 15351 35102976 ~ 35110138 (-) False sri
XM_039806807.1 mRNA upstream 140128 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA upstream 140128 35268357 ~ 35289635 (-) True plekhf2
XM_039806806.1 mRNA upstream 140128 35268357 ~ 35289396 (-) False plekhf2
XM_039807233.1 mRNA upstream 281093 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 281093 35409322 ~ 35448297 (-) False ndufaf6
TU104853 other downstream 110967 35012103 ~ 35014522 (-) True G78444
TU104838 other downstream 147528 34974824 ~ 34977961 (-) False bcan
TU104706 other downstream 632294 34492346 ~ 34493195 (-) True G78321
TU104595 other downstream 979193 34095643 ~ 34146296 (-) True G78245
unassigned_transcript_358 other upstream 5435 35133664 ~ 35133735 (-) True trnap-agg_6
unassigned_transcript_359 other upstream 6762 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_360 other upstream 7861 35136090 ~ 35136161 (-) True trnap-cgg_2
TU104958 other upstream 45637 35173866 ~ 35177239 (-) True G78496
XR_005639861.1 other upstream 172738 35300967 ~ 35309397 (-) False plekhf2

Expression Profile