RNA id: TU104981


Basic Information

Item Value
RNA id TU104981
length 449
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G78518
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35230451 ~ 35230899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTAAGAAGATTTCTCCTGTAGAAATCATCTATTAAAACTtaacagtgactacgtttacaagctgtcaattttcgggttatggtcgggttaaggtcactgttcgggtttctgaaacattcggaataacccgtttacatgcgtgagcagagagagttactcctacatggaatctgtaatcaaatggcaatatcccgatgtaaacggcgacgcacggttagcgtctggacgtagcctacggacaaccttaagacacaataacttttcggtcaccttcttataaatctcactatctcggtactttctgccgtcaacaaaagacattatattattatattatattcatggttttcaccacactgatgaagaaatcggtttcctcctcgctccaaaagtgtggtgctgtgctgcgtctcgccatgtttacctctacttcttgtttacttccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104979 lncRNA upstream 23285 35206931 ~ 35207166 (+) True G78516
TU104947 lncRNA upstream 57248 35168912 ~ 35173203 (+) True G78488
TU104847 lncRNA upstream 199316 35030908 ~ 35031135 (+) True G78440
TU104755 lncRNA upstream 312382 34914357 ~ 34918069 (+) True G78366
TU104754 lncRNA upstream 373919 34844239 ~ 34856532 (+) True LOC120562567
TU104982 lncRNA downstream 1247 35232146 ~ 35232446 (+) True G78519
TU104987 lncRNA downstream 9138 35240037 ~ 35240487 (+) True G78524
TU104988 lncRNA downstream 11433 35242332 ~ 35242570 (+) True G78525
TU104990 lncRNA downstream 13848 35244747 ~ 35244991 (+) True G78527
XR_005639612.1 lncRNA downstream 14844 35245743 ~ 35251683 (+) True LOC120561545
XM_039806874.1 mRNA upstream 139 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 29057 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 29057 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 46894 35177408 ~ 35183557 (+) True cd83
XM_039806533.1 mRNA upstream 62271 35129114 ~ 35168180 (+) True zgc:113232
XM_039804894.1 mRNA downstream 126355 35357254 ~ 35362521 (+) True LOC120561699
XM_039804887.1 mRNA downstream 217669 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA downstream 217669 35448568 ~ 35489477 (+) False nagpa
XM_039804889.1 mRNA downstream 277434 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 304148 35535047 ~ 35546748 (+) True ccne2
unassigned_transcript_361 other upstream 42252 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 373919 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 686072 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1194484 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1326188 33894372 ~ 33904263 (+) False LOC120562157
TU105077 other downstream 174476 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 634943 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 906860 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1063088 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 1161353 36392252 ~ 36434225 (+) False LOC120563181

Expression Profile