RNA id: XR_005639612.1


Basic Information

Item Value
RNA id XR_005639612.1
length 3688
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id LOC120561545
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35245743 ~ 35252114 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aataggccgtgcagttgctgaatctgtcttcatttcagaatgacaaaggtcagtttaaaagatttccgtCAGCTTTGGAGAGGCGGCGAACCGAGCCGGCCGATCAGTTGAATCCAGCTGATCgaccaactttatgcaaatgaggaccGGGCGACTCGACGCCCCTCTTCTCTAAAGTCCCCGTGAAGCTACCAGAATGAATTGCACGGCTGCTCCCGTAGACAACGAATGGGAAGTGTGGACATTATGCTGCCTGTGGACATGTACCTAGGACTGGGTACGGAATtcctttttaggcaccgaccgaattgagtatcgaaaaaggcctcgtcattcaatagaGCTCCGGGCGTCAAACGACTTGACTGTTTACgccgccattttgaaaaatcACCCGCGCCAAAAAGTCTGATTTTCAGCAGCCAGCCTCCCTCCCATCCACAGCGGATATATTTTACACGTGCGGCTGGCGCTGATAAGGCCGCTAAACTGCATCGCTTTGAATGGAAGTGAATGCTCCGTTGTTGTGAAGCTAGCGCTAGCGCTAACGGGATCTCCGTTTGCAGAGTTCAGGATGTAGCGGACTCTCCCGGTGACCGTGCTGCTCTGGGGGACCGGTGTTTTAACTGGTTTTCGGATTAACTGGTGATCTTCCAGATGCGACGTAGGCGTGGCATGAGAAGCCCTGGCCAGGAATGCTCATGTAGGTGACTGTATCGATGCCTGTTTTAAATACCACGAACGTCAATAAATCGTTCACATGTTGACGTTGTCATTCTTATTTGTGTCATAATCCTGTTGAATGTGTTTGTAATTAGGTTTATTAAAACAGTCTGAGGTACCATCGATCAAAGGCTATGCTCCTATCATTTAAACCTACAAAGATCTAATATTTAACATGGGCAACGCAACAGCTGTGgtgtaaaaaaactaaaccaaaGTTTCCAAACGTCAACATGATGCACGAATTCAAGTTCAATATGCAATGCAAGCTCTAGGTCGTGTTACGGTAGGAAATacattgctgcatgtcatccgttctctctctcttgctcccgCATTCACTGGCTCCCTTCAGCTGCTCCTACAAAGTTTTTTTGACAATTCTGAATGGTTTGGTCCATGTGACAATCATTTTAGACTTTGAACTTGAATTAATTAAGGGcggaaaaaaaaagcccaatgAAAAACGATTATTCTTGGACAGCACTATATTACTCAATCATTTCTTAAGATTGATCTGTACACACTTCGGTCCAAATTAAACACAGGTGTAATTGATTTTGCACTTAGGGAAGTTGGAGGCACAGGTGTAGCAACTAAAATCAGGGGTGAGGGGTAGACTATAAACATCTGAGTTGCAGGTCACCATTTTGCGGGTTGTTGAGTAGGTTGGATAGTAGATAAGACGATAGTGAGCAGGAATACTTAGTgaagagagtgtgtgagtgtttattgTAACAGTGGTTGTCTTGTGAGTGATAGTGGGTAAGTAATTGTGGTTTTTCTGAGACAGGCTGGTATTTTAGGTTTGTTGCACCCGTTTGGCTCTGTGTATTGTCTTGTAtttgcttgtttgtgtgttagtCTAGAGTTTAGTGTGAGCAGGAGGTAGGTCAGACAGGTGGAGGTAGGGCCACAAAGATGGATCCTAAAATAGTTCGAGAGGTGCTGGATCTCAAACTGCATAACAAGTATCCCAAAGGATTAAGCAGCAAGGAGAGAAGAGCTGAAACCTTCAGGATAAAAAGGGTGAGGAAACATGCATTATGCACTGCAGAAATTCCCGATTATCTGTTATGCTACAACTCCAAGTAAATCTAATATTATGACATTTAAACACCAGATGGAGACCTGTACTACATCTGCAggtgaaaaagaaaatcagtcACAGCACCTGGCAAAAGTTGTACTTGACTGCAGAAGAGGCCAATTATATTTTTGAGGAGTTTCACTGCAGCCAGATTGGTGGACACAGTGGAACGGAGAAACCCCACAGTGCTATAATCAGCCGCTACTACTGGCCTGGAATGGAGGAGGAAATTCGCAAGCGGgttGCTCAGTGTCGTCAGTGCCAGTCGAAGAGGGCACATATTAAAGAAAAGACCCAATACAATCCAATAGCGGTAAAGGAAATTATGGCATACGctcactttttaaaacattactgatattctcatttcttctttttatacCTTTTCTCAGGTTTCAGAGCCTCTGGAACTTGTTGGGATGGATCTGACTGCTAACAGACCAGGGCTCAGAGTTTTGCAACAAGGTCCCTGAACAAAGTGGTGGCTGACCACCCCAAAGATTGGGACCAGTATTTGCAGTCCACAGTGTTTGCACTTCGGACAAAGAAGCAGTAATCAGAGACCTATGGGCAGGAGGGTTGTAAAGAGACCTTGTGGTCAAAGGCTGGGCCATACAAAGTGGATTCAGAGAAAATTATGGACCTGGCCCCCGGAAAGGAGTTGGAGACCGAGGTTGCGAATGCATACCTATGCATGTGGACCGTAGAACGGGGGGCAAGCATTATTGACGTCTATACCATGACTCAGGTCTGGCAGGGCTcccaaaaaatgttttagaagGATTCAGATGAAAACTATGACGACAACAGCTGGTGTACAAGCGGTTGCTGTAATTTGTAACTACGTTTCCATAGATCATGTATCTCAAGGAGAAGAGGTCCTTGTACGTGGACCCATTTGGGGCCACGCAACAACAAATGGATCATTGCAGGGATGTGACAAGAGCTCCTGGTCCGGAAACATTATCCGGCTATCGGGAAATGGACATGCTCCACGGTTGCCCATCCCAAACAGCAGGACACAACATCATGTGGAGTGTTTGTGTGCAAGATGACTTGTCCCTAGCTGTGTGGGGCTTGTGGGGAGGAGAGCTCGGGGGGCTGACACTGATGACTGGGTAAGCAGCATATTTCAGCTGCAGACCAACGCTTGACTGGAAGACTGGGACCCACCATGTTTAGGTTACCTTCAAATCATCGAGTGAACTCTGAGAATAACAACGTTATTGAACATTTGTAGTGTTTCTCTTTTAGATTGAGTGCACCAACTAAATGgtaccactgtgtgtgtgtgtgtgtatgttgggcATCCCTCCACAGAGGGAGGCTATTTTTGTAAGGgctgtatattttaaaataatactTGTTTCCCATTGTTCATTGCAAGTATGAGCTGAGGGGAATGTACATGTTCACAAACAAGATCAGCAAAAAACTTGTAAACTTGTGGAATCTTTTAGATGaggaagtaaaaatgtattacacgttacaaagattaaaaaaaatatatatactaaaAAGTAGGatgattaaaaaatataaaagctaGGCATGAATGGCAATAAGTATATGAATgggaatgtgttttatttattttgcacatATGTGtgataatatgtatataaatacaaaaattaataatacattttatataaattGATAATATCCTGAGGGACCTAACAACAAGAAAAGAATAATATGTAAAAAGGGGAGGTGTTGATGACACTGCTTGAACTAAGGTGacactttgtttttggttgtgttttttaCCATTTATGTTATGTAAGTGATGTTGTGGTATTTATGTGATTGATTGAAATAAACTAAATAGTTGTCTTTCCTTCAGTCACAGTATTGGGTCAATGTATTTCCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104990 lncRNA upstream 752 35244747 ~ 35244991 (+) True G78527
TU104988 lncRNA upstream 3173 35242332 ~ 35242570 (+) True G78525
TU104987 lncRNA upstream 5256 35240037 ~ 35240487 (+) True G78524
TU104982 lncRNA upstream 13297 35232146 ~ 35232446 (+) True G78519
TU104981 lncRNA upstream 14844 35230451 ~ 35230899 (+) True G78518
TU104998 lncRNA downstream 1301 35252984 ~ 35253278 (+) True G78532
TU105000 lncRNA downstream 8477 35260160 ~ 35262457 (+) True G78534
TU105001 lncRNA downstream 16086 35267769 ~ 35269865 (+) True G78535
TU105003 lncRNA downstream 35123 35286806 ~ 35345126 (+) True G78537
TU105012 lncRNA downstream 71133 35322816 ~ 35350378 (+) False G78544
XM_039806874.1 mRNA upstream 15431 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 44349 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 44349 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 62186 35177408 ~ 35183557 (+) True cd83
XM_039806533.1 mRNA upstream 77563 35129114 ~ 35168180 (+) True zgc:113232
XM_039804894.1 mRNA downstream 105571 35357254 ~ 35362521 (+) True LOC120561699
XM_039804887.1 mRNA downstream 196885 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA downstream 196885 35448568 ~ 35489477 (+) False nagpa
XM_039804889.1 mRNA downstream 256650 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 283364 35535047 ~ 35546748 (+) True ccne2
unassigned_transcript_361 other upstream 57544 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 389211 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 701364 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1209776 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1341480 33894372 ~ 33904263 (+) False LOC120562157
TU105077 other downstream 153692 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 614159 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 886076 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1042304 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 1140569 36392252 ~ 36434225 (+) False LOC120563181

Expression Profile