RNA id: TU105000


Basic Information

Item Value
RNA id TU105000
length 2298
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G78534
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35260160 ~ 35262457 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAATTAGTATTAAACAACGATATGCTGGGTTACATTCTGATTGAAgccctttgttgtttttttagaagccttttaaaaagaaataaaatgaaaaaaaaaaaaaaaaaaggacaccaACCAACAGTGACATCGTCAAAAAGCAACAGAGAGAACATTAGATCCATGAGACCGGTGTGAGCGGCTCGCACAAACAGAAAAACTAAATTATAGTTAAAACACCCCCCACCCACAATGATCTTTCTTTCAGCTGTAACAACAGGTCTCCTCGTTACATCGTTTCCTCAACACATCTCAGGATCTGCAGCTGTCATTTTATCAAGTTACACCTGAAactggtttttgtttttatttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctagtcACAGtgtgaggacagagcttcaacGTGTCTGAATTTAACAAACAGTCACGTTTAGCTGGAAAAACAACTTATTTAGGCTTTCGCAATTTGCAGTTTCCTCcgttaaaggtttttttttggtttttttggtGGGAGTTTTTTCATTTACACTAGACTTGAAGGtgtctacataagagtgacatgacacggtcgtgaacgtgtcataaacattataaacaggtCAAGAGACAAGACAagaacgcttcttttagtaacgGTCATTCTGTTCtttcatgacaagttagggttagagttagagttagggttcatgtcactcttatgtagataacTCCAAGTAAAGggttgacctttttttttttcttacggGATGCGAAGGTCAAAGGAAAGAGGGCGTCGTATGCTGTACGGCTTTTAAAAACCCGGCtttttgtgatattgggctTTAATACATTAGACTTTTCTTGATTGAGTTCACATTCGGTTTAAAAACCTGATTATATAAATCAGGTTAAGGCAATATCCCGGTTTCTCAAACACCATGTAAACACCTTACCACGAAAATCGGAGTTCTCATACCCCGGTTAACAGACATAACAGAGATAACTATTAGCCTATTTATAGGCCTACACCTTAACTCAGGTCAAAGGAAAGAGGGCGTCATATGCTGTACGGCTGTATGGACTTTCTTGTAGAATATTGTGCtataataaaattgacttgacttgattcagtgcatttacatgcagtttaaaaacctGATTATATTCGGGTTAAGGCAGTACCCCGGCTAAAATCTGAGTTGTCATACctctgttaaagaaaaaaaaaggtccatCTAGGGACGTGCATTGCATATTAGCTTAGGCTATAAATGCTCTGGTGTTTGGCATAGGTCTACTCATACTGGTCCTTATACAAATGAACATTAGAGCTAGATAACTCTGTTAGTAACCGGAGGTATTTGTGCAAGTATGCACCTTCACTGAGGTAAGCTGGTCTGCACATGCTGCGTAGGTCCTAACCACACCCAAACACAATCTGCGGactgtttttacacttttcagCGGCGATCCGGAAAGAAAATGTGCAGTTACAGAGTgtctgctctgctgctgcgACCGATGTCTGAAGACGGGTGAGAGTGAACAAGCTGCAGATGCTGCTGATATGTGACGGacgagaagaggaaaaaaaaaaaaagaggaggaggaggagtaggacTTGAAACAGCGTCATTTCCGAACGGATCAGAActgtacaaacaaacaaaccctaACGACATCTGTACAAATGTAcaagaaaaatctaaatcaaaaacaggattaaaacaacattttattcaGTTGTAAAACCTCCAGCAGAGTCTCGGTGGATGTGACGGTATGAAGAAGTCAGAACTCAACCTGGATCAAAAGTCAAGGTGCCAACTTCGTTAAGTGCAACCCACAGCAAAACGGCAGTCCCAACTCCTCGGTATCGGCCACAGCGCGTATAAAGGACAGCTGGTTAGTGATCACCAGCACGTTCACTTCTCCAACCACTGAGGTAGGGCCGCCCACTTTCTAGTCCATTAGTCCACTAATGGACCGTTCGGTTCTCAGTCGACTGAGATTTCATAGTCATTTCTTTACACTTTTATCGagttatttccaagaaacgtacgagcacatctctagTAAATACCAGATTTAAAGTGGAACTTTTAGGGTGATTCTTTGCGGATAAACTTTCAGAAAGTTTTACACGTCTGTcgattaaagctttagtgcgtaactttttgatattaattaaCTACAatcagggttcatacgcattttaaccatttcTGTTCGGCAAATtagaaactacgcactgtagctttaaatcaACATCgtcgctcaatggtgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104998 lncRNA upstream 6882 35252984 ~ 35253278 (+) True G78532
TU104997 lncRNA upstream 8046 35251536 ~ 35252114 (+) False LOC120561545
XR_005639612.1 lncRNA upstream 8477 35245743 ~ 35251683 (+) True LOC120561545
TU105001 lncRNA downstream 5312 35267769 ~ 35269865 (+) True G78535
TU105003 lncRNA downstream 24349 35286806 ~ 35345126 (+) True G78537
TU105012 lncRNA downstream 60359 35322816 ~ 35350378 (+) False G78544
TU105010 lncRNA downstream 86518 35348975 ~ 35350378 (+) True G78544
TU105019 lncRNA downstream 89134 35351591 ~ 35352815 (+) True G78549
XM_039806874.1 mRNA upstream 29848 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 58766 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 58766 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 76603 35177408 ~ 35183557 (+) True cd83
XM_039806533.1 mRNA upstream 91980 35129114 ~ 35168180 (+) True zgc:113232
XM_039804894.1 mRNA downstream 94797 35357254 ~ 35362521 (+) True LOC120561699
XM_039804887.1 mRNA downstream 186111 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA downstream 186111 35448568 ~ 35489477 (+) False nagpa
XM_039804889.1 mRNA downstream 245876 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 272590 35535047 ~ 35546748 (+) True ccne2
unassigned_transcript_361 other upstream 71961 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 403628 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 715781 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1224193 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1355897 33894372 ~ 33904263 (+) False LOC120562157
TU105077 other downstream 142918 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 603385 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 875302 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 1031530 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 1129795 36392252 ~ 36434225 (+) False LOC120563181

Expression Profile