RNA id: TU105019


Basic Information

Item Value
RNA id TU105019
length 1225
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G78549
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35351591 ~ 35352815 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcatcaatttacaaaatgcaaagtgagccaccaaaaaaacatctaaatcacatcaatatttggtgGCCCTGTTGTGGTGAGTGGAAGGaagaggacccaaatgcagagggaggcaggcaggTAGGAGATGGTTGAACTCAGGGATTTAATACAACAAAAAGCagcagcacaaagactggaaaactcACGTAATCACAAACTGACATAAACACAAGGCACAGGGAAGCAACACCAGGCGATCtaacaagagacaaagggaacacagaggctaaatacatgaggtgatgagtaaatcaggaacaggtgagacaacaggtgaaacacatagGGTGGGGCATGACAATCAAcaagggagggaaaacacaggaagtaaacaggacaagacaagacagaaaacagactatcaaaataaaacaggaagcagaacataaacaggGAAATGCACGACAGAAAAATACACCACTAAATACATACAGAccacaatacacaaaacaggatacatcaacacaacagggaacagaaatatacagaatgaatatacaaacacaggaaacatacagaaatcaataatacaggcaacagaaatgaaCAAACAGGTGACAGAAATGTCCATAGCCATCACAGcccctttgccttcaaaccagcatcaattcttattaggtacacttgcaaaaagtcagggaacGTTGAGGATCGTAGACGCAGTGGTCGGCCAAGGAAACTTagtgcagcagatgaaaaacacacatCAAGCTTATTTCCCTTTGAAATCagaagatgtccagcagtgccatcagctcagaactggcagaaaccagtgggacccaggtacacccatctactgtctggacAAGTCTGGCCAGAAGTAgccagcactgtagccaggctgacagatagccacagctctactgagccatctattcctctagcactgagtagtgatgacttcatgagcttctttaatgataaaattataacaattagagacaaaattaatcaccttttgcccttaacttctaacagttcatctttaaatacaggaccgctagaacaaatgactagtcccgacatatacttagactgcttttatcctatagaccttcaacaattaatgttaaagatatcctcagctaagccatctacctgtctcttggaccccatcccaacgagactactcaaagaagcattacccgtggtaaacacttcactactagatatgatcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105012 lncRNA upstream 1213 35322816 ~ 35350378 (+) False G78544
TU105010 lncRNA upstream 1213 35348975 ~ 35350378 (+) True G78544
TU105003 lncRNA upstream 6465 35286806 ~ 35345126 (+) True G78537
TU105001 lncRNA upstream 81726 35267769 ~ 35269865 (+) True G78535
TU105000 lncRNA upstream 89134 35260160 ~ 35262457 (+) True G78534
TU105027 lncRNA downstream 3208 35356023 ~ 35356485 (+) True G78551
TU105070 lncRNA downstream 36700 35389515 ~ 35389883 (+) True G78588
TU105074 lncRNA downstream 40318 35393133 ~ 35393599 (+) True G78592
TU105101 lncRNA downstream 145545 35498360 ~ 35498738 (+) True G78607
TU105092 lncRNA downstream 175660 35528475 ~ 35531724 (+) True G78603
XM_039806874.1 mRNA upstream 121279 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 150197 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 150197 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 168034 35177408 ~ 35183557 (+) True cd83
XM_039806533.1 mRNA upstream 183411 35129114 ~ 35168180 (+) True zgc:113232
XM_039804894.1 mRNA downstream 4439 35357254 ~ 35362521 (+) True LOC120561699
XM_039804887.1 mRNA downstream 95753 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA downstream 95753 35448568 ~ 35489477 (+) False nagpa
XM_039804889.1 mRNA downstream 155518 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 182232 35535047 ~ 35546748 (+) True ccne2
unassigned_transcript_361 other upstream 163392 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 495059 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 807212 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1315624 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1447328 33894372 ~ 33904263 (+) False LOC120562157
TU105077 other downstream 52560 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 513027 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 784944 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 941172 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 1039437 36392252 ~ 36434225 (+) False LOC120563181

Expression Profile