RNA id: TU105030


Basic Information

Item Value
RNA id TU105030
length 915
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id LOC120562928
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35228677 ~ 35232182 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGTATCATTAGGAATACTGTGGGTGGAAATGATTAGTTTATCGAACACCTACTGTGCTTTTTAGGAAACATGCTTGGTGCTGAATAATTTAATGAACTAATGTTCTAACGCTTTCATCAGGCCTTTTCAAAGACTGGAGCTCGGGGTTTGAAGTCTATATGgaatttaattgcatttttttgttgttgtcttgcAGTGTCTACACACAGGATGCGTTCAGGCACAGTGTTGAGAGTTGGTCACCCGTGTTTTGGCAGCATTCAgagcccaacacacacacagtcactcaagTTACAGGTGTAAAAAAGGTAAGCAATCCATCCTTACACAATAGCTAAATGCTATTTATTTTGTGCTCCTTAGAGAATTTAAAACATTCTCTTTGAAGaaacagtgactacgtttacatgcagccaataacccgttcaaaaccggaatattagcaataacccggtcgcgcacggccatgtaaacaccggcaaaaacccgaatatgctcatattccggtttttaaaaacccgaatatgctacctgggttaccccttttctaacccgaaattttggtcatgtaaacgcgtatcggcatatctccatcaaaaggaacattgatttgtgttctgcgcatgttctattcgcaaggaatctcggtcttttgagtagaggaacttcttgtatgcgccagaaaacatagttattataataataattatatactataataatatagttatatatatgtcaatgcagaaaacctgcgtgcagtataccggaagtaaacaagaagtagaggtaaacatggcgagacgcagcacagcaccacacttttggagcgaggaggaaaccgatttcttcatcagtgtggtgaaaaccatgaatataatataataatataatgtcttttgttgacggcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104971 lncRNA downstream 44266 35185678 ~ 35186487 (-) True G78508
TU104968 lncRNA downstream 48824 35181360 ~ 35181929 (-) True G78506
TU104956 lncRNA downstream 102524 35125489 ~ 35128229 (-) True G78494
TU104951 lncRNA downstream 110377 35119467 ~ 35120376 (-) True G78491
TU104891 lncRNA downstream 141274 35089213 ~ 35089479 (-) True G78459
TU105031 lncRNA upstream 25 35231692 ~ 35232182 (-) False LOC120562928
TU105032 lncRNA upstream 647 35232314 ~ 35232545 (-) True G78556
TU105035 lncRNA upstream 2757 35234424 ~ 35235539 (-) True G78559
TU105036 lncRNA upstream 4119 35235786 ~ 35236864 (-) True G78560
TU105038 lncRNA upstream 6893 35238560 ~ 35238761 (-) True G78562
XM_039807202.1 mRNA downstream 120077 35102976 ~ 35110676 (-) False sri
XM_039807199.1 mRNA downstream 120077 35102976 ~ 35110676 (-) True sri
XM_039807203.1 mRNA downstream 120078 35102976 ~ 35110675 (-) False sri
XM_039807201.1 mRNA downstream 120078 35102976 ~ 35110675 (-) False sri
XM_039807198.1 mRNA downstream 120615 35102976 ~ 35110138 (-) False sri
XM_039806807.1 mRNA upstream 36690 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA upstream 36690 35268357 ~ 35289635 (-) True plekhf2
XM_039806806.1 mRNA upstream 36690 35268357 ~ 35289396 (-) False plekhf2
XM_039807233.1 mRNA upstream 177655 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 177655 35409322 ~ 35448297 (-) False ndufaf6
TU104958 other downstream 53514 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 94592 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 95691 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 97018 35133664 ~ 35133735 (-) True trnap-agg_6
TU104853 other downstream 216231 35012103 ~ 35014522 (-) True G78444
XR_005639861.1 other upstream 69300 35300967 ~ 35309397 (-) False plekhf2
TU105304 other upstream 793064 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 871330 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 1117562 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 1117562 36349229 ~ 36359580 (-) False creb3l4

Expression Profile