RNA id: TU105031


Basic Information

Item Value
RNA id TU105031
length 491
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id LOC120562928
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35228677 ~ 35232182 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCAGTGGTAGGCCTTTACTTTGAAATATAACACTGACATTTCAGGCTTTTCTCCAGGAAGTTAAGACACTACTTTGCATATTAATTTGGACAAAAAAAGATGGACTGacgtgtactgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgcgtgtgtctcccTGTGGGATCCGAAGAGTGACCTGGTTACCGAAGACCCTGGAAGCAGTCAGAAGGTAAAGCTTTTAATAAATCATCTAAATCTGGTAACTGATTTATAAAATGTTCAGCTCCGTCTCCGTTATTGTAATTGCACCCTTAAATTACCTCCGACTGTTCCCTGAAACTAGTCATTTATGCCCCTGAAATTACTTAATTGCCTTTTATCACCGTCATTACCAGCCGAACTCCATCTGTCCGCTCGCAACGCAGATTTAATATGCTCAAAACCAAAAGGTTGTATTTGACATAAATCCGATGGATTTTACAGGCTTCAGCTTCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105030 lncRNA downstream 25 35230753 ~ 35231667 (-) True LOC120562928
TU104971 lncRNA downstream 45205 35185678 ~ 35186487 (-) True G78508
TU104968 lncRNA downstream 49763 35181360 ~ 35181929 (-) True G78506
TU104956 lncRNA downstream 103463 35125489 ~ 35128229 (-) True G78494
TU104951 lncRNA downstream 111316 35119467 ~ 35120376 (-) True G78491
TU105032 lncRNA upstream 132 35232314 ~ 35232545 (-) True G78556
TU105035 lncRNA upstream 2242 35234424 ~ 35235539 (-) True G78559
TU105036 lncRNA upstream 3604 35235786 ~ 35236864 (-) True G78560
TU105038 lncRNA upstream 6378 35238560 ~ 35238761 (-) True G78562
TU105039 lncRNA upstream 7230 35239412 ~ 35239773 (-) True G78563
XM_039807202.1 mRNA downstream 121016 35102976 ~ 35110676 (-) False sri
XM_039807199.1 mRNA downstream 121016 35102976 ~ 35110676 (-) True sri
XM_039807203.1 mRNA downstream 121017 35102976 ~ 35110675 (-) False sri
XM_039807201.1 mRNA downstream 121017 35102976 ~ 35110675 (-) False sri
XM_039807198.1 mRNA downstream 121554 35102976 ~ 35110138 (-) False sri
XM_039806807.1 mRNA upstream 36175 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA upstream 36175 35268357 ~ 35289635 (-) True plekhf2
XM_039806806.1 mRNA upstream 36175 35268357 ~ 35289396 (-) False plekhf2
XM_039807233.1 mRNA upstream 177140 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 177140 35409322 ~ 35448297 (-) False ndufaf6
TU104958 other downstream 54453 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 95531 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 96630 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 97957 35133664 ~ 35133735 (-) True trnap-agg_6
TU104853 other downstream 217170 35012103 ~ 35014522 (-) True G78444
XR_005639861.1 other upstream 68785 35300967 ~ 35309397 (-) False plekhf2
TU105304 other upstream 792549 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 870815 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 1117047 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 1117047 36349229 ~ 36359580 (-) False creb3l4

Expression Profile