RNA id: TU105042


Basic Information

Item Value
RNA id TU105042
length 3040
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G78566
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35261787 ~ 35264826 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agacacttagaataataatctgagtctgtcagcggcaaaaacagaacttttagtggacggaaatTGCCCtttaacgttacattgcagcttgttttgaCGCTGCCGGCTGCAGTGGTCTattttaatactggaccagtttcaaaagttgttgttgtttttgttcccatcagtcacatcGACCCCAAAAACACTCGGATGATGCATCCAGCGTGTGAAATAAAATGCGATAACCGGGAAGTGTTTTTGTAATCCCGCTCTTGTCTCTTGCATCGTAGTCTGTGTAATTCCTCCTCGTTCAGTAGTCGAGGTGTGAGCGTTGCTTTTACTGGAAAGAAACGAGTCAGCGTGCGTCGTCTTCCTGTCAGTGACTCCTCCACCCGCTGCTCCGAGGTCAGAGGGCCACGCCGTGTCACAAAAACAAACGTACCCCCTGTCTGAACCCTCGCGGGAGCTTTCTCGCCACACTCTCTGCCAAAACACGCCTACGTGGCCGTCCTTCCCTTCCTATTTTGCTGCACTAGaactttctttttactttcctcagtgcgtgtgtgtggccaGAATCATGTGATCAGTGACCGAACCAGGAACTGAGAAAGCAGCTTTTGGGGGAATTATGGCGAACTGCTTCAGGTTCAGTTGCTCTCACAGATGCTCATGCCATCAGATTGAGCCGGAGTTTCTCTTCCCGGTGACTCCTGTGGAGAGtttcattccttttttttttctttttttttaaggcctAAATCTTTCAACTGAGTGATTACTTTCTTAAAAGTTGGATAATTGGAGCCAAAACCTTTTTAATAAATGATTAATTTAGTCTGAAGTTGTTGGATTTATGTGCGATTAATCTACTTTACATCCAGTAAGAGATTTTAATCTTTTAACACACACCCTTTTTTGGAGGGGGAATATATTTGCTTGTTTGGCATACCCAAATGAAAAAAGTTCAGAACAGAAAGCGGTGAGGCTAAAATGCATGAGGctgtttttgaaaaataacaTCTTCTAGTTTCTGTGCTAGTGATGTAATGATTGACTCCTGACGGAGAAAAATAACTATGACCGATTTAATACAATCTGTTGAgaagttaaaaacaatattattaaatcAAAAAGTGGTAATTTTGCGTTtgaggctatgttcacacttgccgtctttttttgacaagaaaaagttgccCAGTGCGctagtggggaaaaaaagaagaaagctgGCAGCGTTTTGGTTCCAAAAGGCAGCCGAGAGcatcttttgttgctataacaacagctactgctacagCATCCTAGAGCGCTATGTGgagcggtgctaacgttagataaaacaaagtggtggagcgagagagagagcgcagagctaatgttagataaaacaaagtggtggagcgagcgagagagagcgcagtgctaacgttagataaaacaaagtggtggagcgagagAGCgcagtgctaacgttagataaaacaaagtggtggagcgagcgagagagagcgcagtgctaacgttagataaaacaaagtggtggagcgagagagagagagagagaacagagagagagcgcaGTGCTAGCGTTAgataaacaaagtggtggagcgagagagagaaagaacagagagagagagatcaaacAAAGCGAGTCCCTGAACACGGACCACCCGGTCATACCGTATCACTCGCTGTGCTCCGACTCCactttttcttgttgttatggAAACGACAGGTCTCTTTCTACTCCGCTTGTCATTGGTCGGCTGTCAGTAAAGCGCTTGACTTTTTTTCGCCGTTGGCGTTTAAAAAAAGCACTCGGGACTTTTTTTGAAACTCCACAGGATTATAATGCAAAACAGAAGTGTGAACGTAGCCAAGGgctctctgtttttgtttctgctcacaacacaacaaaagaaaTGCCTCCAAAcctattaatcaattatcaaaatagttggcaattagTTTAGTAGTTGAAAACTGatcaattaatctttgcagctttacCTGAGATCAGACAGGGAAACGGACTAGGTGTCACTTCTACGAGTGTCTCCAGATTTTGACTGTGAACAGTTGTGAACTACAACTCCAAGCTGCAGAACCGGGAGAAGAAAGGGATCCTTTTCTTTGTACGTCtttgattatttttgttttgttttttttacacatttaaaattcaGTGTTTTATGTCGCCGCAGCAGAAGTGTAGAGCTGTCcttgactaaagaaattctcAGTCGACTTACCACCCGTGTGATTTTGCAGgcgtttggtgttttaagcccccaaactcgccttccaggcagcgcctaaactaggattaggcaacggttagggttaggtgccttgaagtcgacgttgggggcttaaaacaccattgagcgacGATGTtgatttaaagctacagtgcgtagtttctaATTTGCCGAACAgaaatggttaaaatgcgtatgaaccctgatTGTAGttaattaatatcaaaaagttacgcactaaagctttaatcgACAGACGTGTAAAACTTTCTGAAAGTTTATCCGCAAAGAATCACCCTAAAAGTTCCACTTTAAATCTGGTATTTActagagatgtgctcgtacgtttcttggaaataactCGATAAAAGTGTAAAGAAATGACTATGAAATCTCAGTCGACTGAGAACCGAACGGTCCATTAGTGGACTAATGGACTAGAAAGTGGGCGGCCCTACCTCAGTGGTTGGAGAAGTGAACGTGCTGGTGATCACTAACCAGCTGTCCTTTATACGCGCTGTGGCCGATACCGAGGAGTTGGGACTGCCGTTTTGCTGTGGGTTGCACTTAACGAAGTTGGCACCTTGACTTTTGATCCAGGTTGAGTTCTGACTTCTTCATACCGTCACATCCACCGAGACTCTGCTGGAGGTTTTACAACtgaataaaatgttgttttaatcctgtttttgatttagatttttcttgTACATTTGTACAGATGTCGTtagggtttgtttgtttgtacagTTCTGATCCGTTCGGAAATGACGCTGTTTCAAgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105043 lncRNA downstream 118 35260185 ~ 35261669 (-) True G78567
TU105041 lncRNA downstream 18723 35242859 ~ 35243064 (-) True G78565
TU105039 lncRNA downstream 22014 35239412 ~ 35239773 (-) True G78563
TU105038 lncRNA downstream 23026 35238560 ~ 35238761 (-) True G78562
TU105036 lncRNA downstream 24923 35235786 ~ 35236864 (-) True G78560
TU105063 lncRNA upstream 84160 35348986 ~ 35350176 (-) True G78582
TU105064 lncRNA upstream 87136 35351962 ~ 35352212 (-) True G78583
TU105073 lncRNA upstream 127224 35392050 ~ 35392352 (-) True G78591
TU105108 lncRNA upstream 140521 35405347 ~ 35407517 (-) True G78613
TU105109 lncRNA upstream 149240 35414066 ~ 35414386 (-) True G78614
XM_039807202.1 mRNA downstream 151111 35102976 ~ 35110676 (-) False sri
XM_039807199.1 mRNA downstream 151111 35102976 ~ 35110676 (-) True sri
XM_039807203.1 mRNA downstream 151112 35102976 ~ 35110675 (-) False sri
XM_039807201.1 mRNA downstream 151112 35102976 ~ 35110675 (-) False sri
XM_039807198.1 mRNA downstream 151649 35102976 ~ 35110138 (-) False sri
XM_039806807.1 mRNA upstream 3531 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA upstream 3531 35268357 ~ 35289635 (-) True plekhf2
XM_039806806.1 mRNA upstream 3531 35268357 ~ 35289396 (-) False plekhf2
XM_039807233.1 mRNA upstream 144496 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA upstream 144496 35409322 ~ 35448297 (-) False ndufaf6
TU104958 other downstream 84548 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 125626 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 126725 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 128052 35133664 ~ 35133735 (-) True trnap-agg_6
TU104853 other downstream 247265 35012103 ~ 35014522 (-) True G78444
XR_005639861.1 other upstream 36141 35300967 ~ 35309397 (-) False plekhf2
TU105304 other upstream 759905 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 838171 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 1084403 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 1084403 36349229 ~ 36359580 (-) False creb3l4

Expression Profile