RNA id: TU105070


Basic Information

Item Value
RNA id TU105070
length 369
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G78588
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35389515 ~ 35389883 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCAGGTTGCAGACATCTTGGCTAAAACTGTGGACCTGATACCTTCACTCCCAACGTCCATCAAACGTATCGTGGTCCACTGTGGACACAATGACATGTCCTACGGTGAAAGTGAGCGCACAAGGAAAGATTTTAACACTCTTATAGATACTTTAAAGAGCACTGAGATGCCGGTTTTTATTTCGGGCCCACTTCCCTCTCTAGGCTGTGGAATAGAACTTTTCAGCAGACTTCTAGACCTTAACACCTGGCTTCAGAATACCTGCAACCGTCACAACATAGGTTTCATCGACAATTTTAATCTGTTTTGGGAACGTGACTCCCTGTTTAGCAGGGATGGGATTCATCCCAATGCACGCGGCAGCCAG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105027 lncRNA upstream 33030 35356023 ~ 35356485 (+) True G78551
TU105019 lncRNA upstream 36700 35351591 ~ 35352815 (+) True G78549
TU105012 lncRNA upstream 39137 35322816 ~ 35350378 (+) False G78544
TU105010 lncRNA upstream 39137 35348975 ~ 35350378 (+) True G78544
TU105003 lncRNA upstream 44389 35286806 ~ 35345126 (+) True G78537
TU105074 lncRNA downstream 3250 35393133 ~ 35393599 (+) True G78592
TU105101 lncRNA downstream 108477 35498360 ~ 35498738 (+) True G78607
TU105092 lncRNA downstream 138592 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA downstream 138592 35528475 ~ 35531724 (+) False G78603
TU105163 lncRNA downstream 185289 35575172 ~ 35577811 (+) True G78645
XM_039804894.1 mRNA upstream 26994 35357254 ~ 35362521 (+) True LOC120561699
XM_039806874.1 mRNA upstream 159203 35208147 ~ 35230312 (+) True wdr73
XM_039806875.1 mRNA upstream 188121 35188683 ~ 35201394 (+) True c7h8orf37
XM_039806876.1 mRNA upstream 188121 35188683 ~ 35201394 (+) False c7h8orf37
XM_039806851.1 mRNA upstream 205958 35177408 ~ 35183557 (+) True cd83
XM_039804887.1 mRNA downstream 58685 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA downstream 58685 35448568 ~ 35489477 (+) False nagpa
XM_039804889.1 mRNA downstream 118450 35508333 ~ 35528009 (+) True tp53inp1
XM_039804890.1 mRNA downstream 145164 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA downstream 145361 35535244 ~ 35546748 (+) False ccne2
unassigned_transcript_361 other upstream 201316 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 532983 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 845136 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1353548 33990595 ~ 34035967 (+) False sh3bp5b
TU104327 other upstream 1485252 33894372 ~ 33904263 (+) False LOC120562157
TU105077 other downstream 15492 35405375 ~ 35408682 (+) True G78594
TU105193 other downstream 475959 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 747876 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 904104 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 1002369 36392252 ~ 36434225 (+) False LOC120563181

Expression Profile