RNA id: TU105092


Basic Information

Item Value
RNA id TU105092
length 3160
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G78603
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35528475 ~ 35531724 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTTTTAGAAATGTacttttattgctttttatctattctatttTCCATGTTAACTTAGTTACAAACCAAAAAAAGTAGCAATGATCTTTTAACCTTTTCACTAGTTTTATAATacagatttttgttgttgttgttgtttaactTTTCAAGCGTTTGCTAACCGTTCGCGGCCTCGGTGCTCTGAAACGGTGGACGGTCTAATGTTTAATACGTCTGCTGTTGGGAGAGTATAGACCCCGGGCCGAATCGCCACACTGCAATCTGTCCATCTGACAGTTGGACTGAGTCCGAATGGATGCACATTTCTGTcaggaaaagaaaataatggACGAAATGTTGGGAATGAGgacactttttcttttaaaaacacgCCAAGTGAGTCAAAATTACGAGATGGAAAGTCAAAAATATTACTTTTAAAAGTCTAAATAATGAGGTAATGGTATTTATCTCATCATGACAACTTCTCAACTTATAATTGTCACATTTAAAGGCCAAAAAGTTCACTCGCTATCTCAGGATTTTGACTTACtcaaactacacacacatttcacaaaTTTCGACTCCCAAAATTTGAATTACTGCATCAACTTTTGGGTATCAAGGACGTTAAAACGAGTCAGATTTTTACCTTCTCTCAAACATTAAGCCTTCACATCTCATAATTTTGACTTACTgtgagtgttgttttttttttattattattattcctgaCTTTTCACACATTACTTTCTTTTCTCGGCATGAATGGACTTCCATACCGAATCTCATGTTGAAACTTTAAATCATAATCTATCCAAGGATGTGTTGAAAATCCGCTCGAAATGTTATCAAATGATCTCAGAACAGGAGAAAAAGGCTCGACCTTCATATTTGGTCGACTTATTCCAGAATAATCCGTCCTCGGTGATTTTCGGAGTCGATTTTTATTGAGTCAAACGTTAAAAACGAGCAGAAtgaaggctgttttatgctacTGCGTCGTGACCTTTTCGGAGTTCTGCGTCGAGGGTTGAACGTGATTTGCGATTGCGGGGTGTCTGCCggccagtttatgttatgttggCAAGCTAACTTTAGCGCAACTGCCCACAAAGTGctgcttgctggcgaagtgctaatttcaaaaaGCTACTGACATTTTGTAACCAcaatatgtctgagtttatttgcggagctgatgtcagtgaactagcatgttgctactcgcCACAGTTAGGCTGCTTGAAGACTAccaacacacaggaccagttgaccaattgcagtccttgcggtctgcgtcgcctcgacgcaaagtgacacatttttggaggtgcacgtGGAGCTACGGCGGAGGGCTCGGAGGGGGGGTTCTCGTCAGGGCCGGTCCGAGGCTTTtggggggccctaagcaggatttggtttgggggactctccacattgtaacatgcTGCCGCTGCATttggcactaaaccaacttgtgtattgtaaatattagtttaagcactcatatTGTGGAAATAAGAgagacctattagcagcaacGCTATCTTTAtatagaccggctctgttatgagctctattgtgggacatttcaagcgctcttgggggGGCCCCCTCTGGTAGCCCcggggccctaagcagccgcttagttcgcttatgggtCGGGCCGGCTCTGGTTCTCGTCGACGCAGAGGGGTCCGCTGGGGAACGCCGTTGATTCAACGCGGTTGATTGACGCCGAAGCGTAAAACAGCCTTTTTTAGTGAAGCGATTTTATAAAGAAGTTCAGGAAGTGGATCCTGTTTTGAAGATGCACAAAATATATACACTTGTGTAGTACAAACACGCAAGAGAAAAGTTTTTAAAGCTCGGTACAGACCCAGCTGTGGCGGAGACTGTTTGCAGCGTGGTTCCTGAAGCGCCGTCTGACTTGAGTTTGTCTCGGTGGTCTCCGTGGCGATGGGACAGCAGCATCATCAACGTCCGTACGGTTAGATGTAAACGATCGTATAGTTGAGTGGTTCTCTCTGGTGTATTTATGCTTCGGTCTTATTGCtcaaatgtctctctctctctatctatctatctatctatctatctctctctctctgtctctctctctctctctctgtctctctctctgtctctctctctctctctctctctgtttctctctctctctctctctctctctctctctctctctctctctatctctatctctatctctctctctctctctgtctctctctctctctctctctctctctctctctctctatctctctctctctctctctctctctctctctctctctctctctgctatgGAGCTTTGTAATCATAGCCAATGTTATTTGGTTTTTAAAAGGCAAACTTAAAAGACAGAAGGGATCGGAGGAGACGAACATGCTGATCGGTCTCCTCCGGCTGTCAggtgccttttttttctttcttttatttctcaGTTCATCTCTCCATCATCAAACTAACAGGGatttgtaatgtttttgttCAATGCCTTTTGAAAATTTGTGGATCTCGTGCCTTCCAGgtttaaatgttgaaatgacaatgcATCAATGAAGAACTtgaactcccctttttttttttttttttttttttttcttacgtCCTGAGTGGACATAATCtatcatttttaaaaacacacacacacacatacacacacacacagacacacacacaaaaacggaCATCAGAAACCAACTATGCACCACTCGGAGGAAGCTTGTTTGCTCCGCCCGCCCGCCAAGCATTTTATAATGACTCAACAAACCAGACAGAATGATGTAGCAAAACCTCTTTTCtccttgtttatttaaaaaagttaaaaaaagaaaagtgtgaaGAATATCTGtggcatttttgtttttcaccatgtttttcttttttgttttgttttgttgcttttatttgTGTAGTTTACTGGAATAATACAGCACTTtgccaaaaaggaaaaaaaaggttgtaggACTTTTTAGggttatctttttatttatcgACATAACTGGTCTCCATCTTTGTATTTTGGGATGTGTGACAGATCAATTCACTCTGTTCTGATGTCAACAAAAAAGCTAATTAAAAAGTGGGGTCATCTGTCTTCAGACTGTAATAGTTAATACATGTGATCTCTCTCTCATTAGCCTATAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105101 lncRNA upstream 29737 35498360 ~ 35498738 (+) True G78607
TU105074 lncRNA upstream 134876 35393133 ~ 35393599 (+) True G78592
TU105070 lncRNA upstream 138592 35389515 ~ 35389883 (+) True G78588
TU105027 lncRNA upstream 171990 35356023 ~ 35356485 (+) True G78551
TU105019 lncRNA upstream 175660 35351591 ~ 35352815 (+) True G78549
TU105163 lncRNA downstream 43448 35575172 ~ 35577811 (+) True G78645
TU105172 lncRNA downstream 111182 35642906 ~ 35643353 (+) True G78653
TU105177 lncRNA downstream 116806 35648530 ~ 35691645 (+) False G78655
TU105175 lncRNA downstream 129676 35661400 ~ 35691645 (+) True G78655
TU105181 lncRNA downstream 129676 35661400 ~ 35691645 (+) False G78655
XM_039804889.1 mRNA upstream 466 35508333 ~ 35528009 (+) True tp53inp1
XM_039804887.1 mRNA upstream 38998 35448568 ~ 35489477 (+) True nagpa
XM_039804888.1 mRNA upstream 38998 35448568 ~ 35489477 (+) False nagpa
XM_039804894.1 mRNA upstream 165954 35357254 ~ 35362521 (+) True LOC120561699
XM_039806874.1 mRNA upstream 298163 35208147 ~ 35230312 (+) True wdr73
XM_039804890.1 mRNA downstream 3323 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA downstream 3520 35535244 ~ 35546748 (+) False ccne2
XM_039804892.1 mRNA downstream 3570 35535294 ~ 35546748 (+) False ccne2
XM_039805911.1 mRNA downstream 90036 35621760 ~ 35630081 (+) True LOC120562274
XM_039805912.1 mRNA downstream 90197 35621921 ~ 35630081 (+) False LOC120562274
TU105077 other upstream 119793 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 340276 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 671943 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 984096 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1492508 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 334118 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 606035 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 762263 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 860528 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 860528 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile