RNA id: TU105163


Basic Information

Item Value
RNA id TU105163
length 2563
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G78645
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35575172 ~ 35577811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGAAAAGCCATTTTTATTAAAAGTCATATACAAAAGGAATACTCCATGTTAGGTTACTATAAAACGTCCATATGTACATCGTATCATACACATCAACAACACTCTGTCGGAGAAAACGCGCGTGAACTCGACACGACATTCACACACTGCTTTTAAAAACACGGGACTTACACAAACGTCCACAGATGTGTCACACGTCAAAACTCACAACATCTGGAGCTGCACATCGGTTTAGAAAAAGACACCTGTGTTATTCCATTTGGATGCATAGCTTCGAGTACAAGTCTTTTTGGGCTCACTTGGTTTTTGTTATTTCGGTACCAGAAGAGAAATGAAAACCACATTCTCATGCAACAATCCCAGGAACCTCGGCGGCAAATGTTCTTTTAATTCCTGTCTGCATCTTGGGGAATAGtgtcgctttgccagaccctcctccaaagcgctgcggaagagggtctggctagtccacaaagcattctgggatgggagaaaaaacatgctctggtttattggcatttccttaaaccaatcccaatcttCATGGGCGATGCTAAGCgtcggacggagccacggtgcctctgcaaaatagcctctggaaggaacttgttttggtggaacatgtgtacgtccaaaggttgttttagtcgtgcaacagaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcagttaaccaccggaggttagaacgccaacacaaagaaagcagaagctagcggatatccggcctaaatgagtgaaatctggcggatTTTCCGAtctgcaacggagcaatcctggaagtggaacgtcaaggatatagtcTGCTTGGGGAAAGACTCATGACCTGACGTGCAATCAAAACTACAGCGGCTGAGAtcaatcaattagttgtcaataattaaattaatcgcTATTATGACAATTgatttaagtctttttttttattgaaaaaaaaaaggtaaaaattgtgatttcagcttgttaaatttaaatatgttctagtttcttctctcctctgggacagtaaactgaatatctttgagttgtggacaaaatgaGGGTTGAAAATctgtgctttaacaaaatgttatttacacattgagatttttgatgaataatcatcagaaCTGTCGAATTAATACGTAAAAGTAAGGCTGTGTTCACACTTGGCttcttttttgacaagaaaaagttgactagggcgcatttgtaaaaaaaaaaacaaaaaaaaaagctggcagtgttttggttccaaaaagcagccgagagcgtcttttgttgctataacaacagctacaGTATCCTAGAGCGCTAAGTGGAGAGGTGCTAaggttagataaaacaaagtggtggagcaagctagagaaagaacagtgagagagagagagagagagagagagaaagagaaagagagagaggtgctaatgttagataaaacaaagtggtggagcgagctagagaaagaacagagagagagagagagagagagagagagagagagagagagagagagaggtgctaacgttagataaaacaaagcggtggagcgagctagagaaagaacagagagagagagagagagagagagagagagagaggtgctaacgttagataaaacaaagtggtggagtgagctagagaaagaacagagagagagagagagagagagagagagagagagaaagagagagagagaggtgctaacgttagataaaacaaagcggtggagcgagctagagattGTCATTGGTCGGCTGTCAAAAAAGCGCTTGgcgtagtttttttttttcaacttcaaaaagacGCTCCGAACTGCAGAAACTTCTCTGAAAACACGGTTTACTCCGcaggattataatgtaaaacagacgctGGCAGCTTCAAAAAAAGATGCCAAGTGTGGACACAGCCTTCAAAACACTTAACGATATCAAAAATCTAAGACGATTTCTAGCCTCACACATCGATGTAATATcgacatattgcccagccctaaaacAACTAAACAACTTTCAATTTAAACCATCTGGATTTCTTTGTCGGTTTGAGGATTGAGTTACGCACTTCTACTTTAAACACTCACTTTTATCAAGTTGATAAACTCTCTGATTGTACTCTCTGCCTGCTCAGACTCACTACACGTACATATAAAACTACATTCATCAGGCGGTGTGAAGACaacacgcacacaacacacatacgtTTGTTTCACTAGCTTTGTGGGGACCGTcgttgacataatgcattccctagccccttaccctaaccttaaccatcacaactaaatgcctaaccttaacccttaccctcaccctaaccataacctaattctatccctaatcctaaaacaaagtcttaaccttcaaacagccctttaactgggtctgcacagccttgtggggcccaaaatgctggaccccacaaggttGTGCAGACCcaacaagtatactgtattccccggtttttggaccccgcgaatatagtaaaacaagcccacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105092 lncRNA upstream 43448 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA upstream 43448 35528475 ~ 35531724 (+) False G78603
TU105101 lncRNA upstream 76434 35498360 ~ 35498738 (+) True G78607
TU105074 lncRNA upstream 181573 35393133 ~ 35393599 (+) True G78592
TU105070 lncRNA upstream 185289 35389515 ~ 35389883 (+) True G78588
TU105172 lncRNA downstream 65095 35642906 ~ 35643353 (+) True G78653
TU105177 lncRNA downstream 70719 35648530 ~ 35691645 (+) False G78655
TU105175 lncRNA downstream 83589 35661400 ~ 35691645 (+) True G78655
TU105181 lncRNA downstream 83589 35661400 ~ 35691645 (+) False G78655
TU105178 lncRNA downstream 83887 35661698 ~ 35691645 (+) False G78655
XM_039804890.1 mRNA upstream 28424 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA upstream 28424 35535244 ~ 35546748 (+) False ccne2
XM_039804892.1 mRNA upstream 28424 35535294 ~ 35546748 (+) False ccne2
XM_039804889.1 mRNA upstream 47163 35508333 ~ 35528009 (+) True tp53inp1
XM_039804887.1 mRNA upstream 85695 35448568 ~ 35489477 (+) True nagpa
XM_039805911.1 mRNA downstream 43949 35621760 ~ 35630081 (+) True LOC120562274
XM_039805912.1 mRNA downstream 44110 35621921 ~ 35630081 (+) False LOC120562274
XM_039805916.1 mRNA downstream 171683 35749494 ~ 35773988 (+) False LOC120562275
XM_039805914.1 mRNA downstream 171683 35749494 ~ 35773279 (+) False LOC120562275
XM_039805915.1 mRNA downstream 171683 35749494 ~ 35769100 (+) False LOC120562275
TU105077 other upstream 166490 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 386973 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 718640 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1030793 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1539205 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 288031 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 559948 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 716176 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 814441 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 814441 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile