RNA id: TU105178


Basic Information

Item Value
RNA id TU105178
length 280
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G78655
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35648530 ~ 35691645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctgtctgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105172 lncRNA upstream 18345 35642906 ~ 35643353 (+) True G78653
TU105163 lncRNA upstream 83887 35575172 ~ 35577811 (+) True G78645
TU105092 lncRNA upstream 129974 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA upstream 129974 35528475 ~ 35531724 (+) False G78603
TU105101 lncRNA upstream 162960 35498360 ~ 35498738 (+) True G78607
TU105188 lncRNA downstream 26307 35717952 ~ 35718951 (+) True G78662
TU105202 lncRNA downstream 51650 35743295 ~ 35753302 (+) False LOC120562275
TU105210 lncRNA downstream 83627 35775272 ~ 35813607 (+) True G78669
TU105208 lncRNA downstream 91781 35783426 ~ 35783663 (+) False G78669
TU105209 lncRNA downstream 91781 35783426 ~ 35813607 (+) False G78669
XM_039805911.1 mRNA upstream 31617 35621760 ~ 35630081 (+) True LOC120562274
XM_039805912.1 mRNA upstream 31617 35621921 ~ 35630081 (+) False LOC120562274
XM_039804890.1 mRNA upstream 114950 35535047 ~ 35546748 (+) True ccne2
XM_039805916.1 mRNA downstream 57849 35749494 ~ 35773988 (+) False LOC120562275
XM_039805914.1 mRNA downstream 57849 35749494 ~ 35773279 (+) False LOC120562275
XM_039805915.1 mRNA downstream 57849 35749494 ~ 35769100 (+) False LOC120562275
XM_039805917.1 mRNA downstream 57849 35749494 ~ 35759175 (+) False LOC120562275
XM_039805920.1 mRNA downstream 70168 35761813 ~ 35773279 (+) False LOC120562275
TU105077 other upstream 253016 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 473499 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 805166 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1117319 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1625731 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 174197 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 446114 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 602342 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 700607 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 700607 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile