RNA id: XM_039805919.1


Basic Information

Item Value
RNA id XM_039805919.1
length 2088
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120562275
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35743295 ~ 35773988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACTTAAAGAAACAGCAAAAAGAAGAATTTCATGTTTTGTCAATTGGGTCTTCAGTCTCAGGAGAAAGAAATGATTGAATTTGATTATGATAAAAGTTAGTGTCAGTTGGTAATAGGTTGACGGCAGAGGCGTGGGAAAATGCTGCAGATCCACACAGTGTGGTTTAACACCATTAAAGGAGAAGACTTAAGACATCACCTGCTAACCACACAACAACTCTGTCACACTTTAAAAGCAGAACTAACAACTAAACATGTTCTCTGGGAAATTGAAGTTGGTacacattatttttcataataCATGATGCTTTGGAAGCATGACAACACATTGCCAGCAAAAGCAAAGATTACAGCATGTTTGTAATTAGTGTAATTATTTAGGCAACCGGAGTTTGTACATTTCTGACTTTGTTGGCCTTGTGGTCTGTGGACACTATGACACTATGACGCTATCTTTGTTCCCCCTGTGATCTCATCTTTTAAGACACTTCAGACAGTAATGCACCCACTCTTCTTCCCCTTCACACCACTTTCTTATTGGCTGCCGAATTGAAAGAAAACCCCAGTCCCAATCTCAAAGCAGAAGTCCTGTAAAGACCATCACAGCGGAGCAGACGCCCTCCTAACATACAGGACTGCAGCAGgactttaaacatttgttcaGGATGAACAGAAATCTACAGGAGGAAATTGAGGAAATCGAGGAAGCAGCAGCTAACTATGTTAATGTACCAGCATGCACTGTGGAGAAAATGGCAGCTCGTCCAGACCAGAGGTTTCGCTGCTTCTCTCAGTATTTTCTACCGATAGCAGTGTGTTGGCTGATACTGTTGGTCATCATGGGCCTCCGTATCTACTTTGCTACATTAAGTCATGAGAGTGATGTAAGTGAGCTGATGGCAGCCAATCGCAACCTGACAAACCTCAACGACAAACTCAGCGTCTTAGAAAACCAGATCACAAACCTGACCGCAGTAAACCAGGAGCTGGAGACGGAGAGGAACAACTTAAGAAGACAAATACAGAACATCAGTCGAGCTCAGGGGAGCATTGATGAATACTGCCCCAAAGAAAATAACGTTTCAGAGAGAGGGTGTAGAGATTGTCAGAAGGACTGGGAACTCATCAATTCCAGCTGCTATCTGGTTAATGGTCCTCCTGATCAGAAAACCTGGGAAGAAGCTCGAAAAGACTGCAGAGCACGGGGATCAGATTTGGTTGTTGTAGATACTCGAGATGAACAGAATGCACTCCGTCATCACAGCCGGTACGGATCCTGGATTGGTCTGAGAGCTGAAGGAGGGAGATGGAAGTGGATCGATGGAAGTGATCTGGTTGAAAGTGTCACCTACTGGATAGATGAACCACCACCTCCTACTGATGGTCAGTGTGCAGTTACTACCTATATTTTCAGCTGGACATCAGTGAGTTGTGCTGAGAGAAACGGATGGATCTGCGAAAAGAAGCCTTTATCTGTTTAAAGACTGCAGTCAGACTTGAGAAGGTTACTGGATACTCTATATGATAATATCAACTGGCTTCATTAATATCAAACTGGGAAGACTTCTACgtcacaattaaaaaaaattgtttttctaaaatatatAGGCATTTTATTTCGTTTACtgtataaaaaagagaaaatatttacaaagctgtgtgtggatgtgtgtgtttgtatgtgtcagtgtgtgtgtgtatgtgtcagtgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtaaatgtaatgtataaGTGAATTAGATATTGGATTATATAAGTATGCTACTAAACTGTTAAGTATTAATAACTGTGAATGTGCTTTTGTTCTCCTTTGTTAGAGATGTGATGTTTATAATTTGTATATAAGCAGATTGATGAGAGGTACAGACAGGCTGCTcagcttcctgtttcctgtgtgaCAGGTTACATTGTTGCTACTCATGAGCCAAAATGGAGGCACAGCatcacttgtttttcttcagcaTTAAATGTAAATCATATTAATATTTAGAGTGTTTAATCTATCTAGAAGCAAAGTCCTGTTTCATTACATTGAATAAAAACGCTGCGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105202 lncRNA upstream 11588 35743295 ~ 35753302 (+) False LOC120562275
TU105188 lncRNA upstream 45939 35717952 ~ 35718951 (+) True G78662
TU105181 lncRNA upstream 73245 35661400 ~ 35691645 (+) False G78655
TU105210 lncRNA downstream 1993 35775272 ~ 35813607 (+) True G78669
TU105208 lncRNA downstream 10147 35783426 ~ 35783663 (+) False G78669
TU105209 lncRNA downstream 10147 35783426 ~ 35813607 (+) False G78669
TU105215 lncRNA downstream 48011 35821290 ~ 35821641 (+) True G78674
TU105270 lncRNA downstream 134747 35908026 ~ 35908235 (+) True G78705
XM_039805917.1 mRNA upstream 5715 35749494 ~ 35759175 (+) False LOC120562275
XM_039805911.1 mRNA upstream 134809 35621760 ~ 35630081 (+) True LOC120562274
XM_039805912.1 mRNA upstream 134809 35621921 ~ 35630081 (+) False LOC120562274
XM_039804891.1 mRNA upstream 218142 35535244 ~ 35546748 (+) False ccne2
XM_039805922.1 mRNA downstream 76194 35849473 ~ 35856736 (+) True LOC120562277
XM_039805923.1 mRNA downstream 92570 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA downstream 92570 35865849 ~ 35872244 (+) False LOC120562279
XM_039806167.1 mRNA downstream 101848 35875127 ~ 35883935 (+) True LOC120562454
XM_039805921.1 mRNA downstream 123071 35896350 ~ 35900892 (+) True LOC120562276
TU105077 other upstream 356208 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 576691 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 908358 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1220511 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1728923 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 92563 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 364480 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 520708 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 618973 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 618973 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile