RNA id: TU105229


Basic Information

Item Value
RNA id TU105229
length 1163
lncRNA type intronic
GC content 0.46
exon number 4
gene id G78680
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35621698 ~ 35625221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACGGCAAACGGTTGGTGACCTCCAGTCGCCCAGTGTGATGTTGGTTTCCACACCGCAGGTCTTGGCGTAAGCGTCAAAAAACTGGCAGCTGAGAGCGAGGCCTTCCTCGGTCGGGAATTTGCACGAAGTTTCTGCACAGGCGGTTATGTAGGGAGCTGGGTCAACTTGGCTGTGGCAATCGGTGAAGGGTGCCTGCAGTGTTGCCATCAAAAGAGATTGTGAGCGAAGGACCAGTAACAGTGACTCCAGTCTGGTCCTTGGAGAACGCCACACCGTTGATCAGTTGAGCCGTGGCGTTGAGCATTAGTGTTCGGCCCTCAACTGAACTAGTCCCCCTTGTCCAAGATAGATTTCTAGGTATCGATAGACGTCCAAGGCAGATGTTGAAACTATTAAAATTATTTGCAAGGAGTCCAAAAACGGCACATCTGTACGGCTTCGCTCCTGGAATCTCGCTGCTAGTACAACAGTGTCATCTCCAATCAGTGTGTATGTACAGCGATCCGGGACCGACCGGATTCTGTTGAAGAAATCAATGACGGTGGAGGCAGTCACAGTGCACACAGGGTGGGGCACAGTGCTGCTTACCTGCCAGCAGAAGGAGCAATGCAACGGGCTTCAACATGATGAAGTAGCAGCAGTAAAGTGTCGGAGACCTGGGAGGCATACAGGTCACATAGTAAGTGGCAAAACACATTATTTAATCCTTTCAATAACCCTCAGGGGCGTAGCAAAAAATTCTTCAACCTGTACAATGGCATTATCTGTGATTTTTGGGCTCCAGCCCCAAATGTGGCCCCCATTTTTCTGATGTTCAAATACATAACGTATAAGGGATGGTTTTGATGATTTGATTGTTATTAATGCCTAAATCATCAAATTTAAACATAAATAGGAACATGTAAAACGAATGACAAACCAGGGTTGTTATAGTAAACTAGAAGGAAAATAAGCAACCGTTAGGTTGTGGAGTATGGCAGACCCCAAAGCAGAGGTAGCAGGCAGAGTAGATCTTGATGAATAacagaacacaaacaaaagGTTTACAGCCAAACAGCAGGTAAAGAAAAAATCCAAAATAGGAGAAAGTAAAAACGGGAATAAcagaaaccaaaaacacagaggaTAAACAGGTAACTCACAAAACAGACActccaaaac

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105127 lncRNA downstream 89908 35525073 ~ 35531790 (-) True G78620
TU105128 lncRNA downstream 89908 35525073 ~ 35531790 (-) False G78620
TU105144 lncRNA downstream 104764 35498361 ~ 35516934 (-) False G78631
TU105142 lncRNA downstream 104764 35498405 ~ 35516934 (-) False G78631
TU105143 lncRNA downstream 104764 35498405 ~ 35516934 (-) False G78631
TU105247 lncRNA upstream 108445 35733666 ~ 35734165 (-) True G78690
TU105248 lncRNA upstream 115909 35741130 ~ 35741410 (-) True G78691
TU105261 lncRNA upstream 196064 35821285 ~ 35821651 (-) False G78698
TU105262 lncRNA upstream 196064 35821285 ~ 35821651 (-) True G78698
TU105299 lncRNA upstream 357187 35982408 ~ 35984039 (-) True G78729
XM_039806165.1 mRNA downstream 55791 35554223 ~ 35565907 (-) True LOC120562452
XM_039807233.1 mRNA downstream 173400 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA downstream 173401 35409322 ~ 35448297 (-) False ndufaf6
XM_039807235.1 mRNA downstream 173676 35409322 ~ 35448022 (-) False ndufaf6
XM_039806807.1 mRNA downstream 312301 35268357 ~ 35309397 (-) False plekhf2
XM_039806166.1 mRNA upstream 209881 35835102 ~ 35842232 (-) True LOC120562453
XM_039807237.1 mRNA upstream 307813 35933034 ~ 35938978 (-) True LOC120563121
XM_039807236.1 mRNA upstream 321162 35946383 ~ 35950158 (-) True LOC120563120
XM_039804947.1 mRNA upstream 369431 35994652 ~ 35997771 (-) True LOC120561730
XM_039804897.1 mRNA upstream 438341 36063562 ~ 36071103 (-) True kcnv1
XR_005639861.1 other downstream 312301 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 444459 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 485537 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 486636 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 487963 35133664 ~ 35133735 (-) True trnap-agg_6
TU105304 other upstream 399510 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 477776 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 724008 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 724008 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 1039321 36664542 ~ 36748224 (-) False LOC120563186

Expression Profile