RNA id: TU105270


Basic Information

Item Value
RNA id TU105270
length 210
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G78705
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35908026 ~ 35908235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatatttcaaagctctttgtgtgtctgaaaAAAACGGACACTCAGATGTAATGTATAGGTGAATTATATAATGGATTCTATAGGTATGGCTACTGTCAATCTGAGAATACAATGACTCGCCTGAAGGGGGAATGAACTCTGAATGTGCTTTTGTTCTCCTTTGTtagagatgtgatgttgatAATTTGTATATCAGCAGATTGATGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105215 lncRNA upstream 86385 35821290 ~ 35821641 (+) True G78674
TU105210 lncRNA upstream 94419 35775272 ~ 35813607 (+) True G78669
TU105209 lncRNA upstream 94419 35783426 ~ 35813607 (+) False G78669
TU105208 lncRNA upstream 124363 35783426 ~ 35783663 (+) False G78669
TU105202 lncRNA upstream 154724 35743295 ~ 35753302 (+) False LOC120562275
TU105271 lncRNA downstream 585 35908820 ~ 35909069 (+) True G78706
TU105272 lncRNA downstream 20205 35928440 ~ 35928896 (+) True G78707
TU105281 lncRNA downstream 54538 35962773 ~ 35963505 (+) True G78716
TU105307 lncRNA downstream 126113 36034348 ~ 36034652 (+) True G78736
TU105328 lncRNA downstream 179638 36087873 ~ 36088096 (+) True G78756
XM_039805921.1 mRNA upstream 7134 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 24091 35875127 ~ 35883935 (+) True LOC120562454
XM_039805923.1 mRNA upstream 35782 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA upstream 35782 35865849 ~ 35872244 (+) False LOC120562279
XM_039805922.1 mRNA upstream 51290 35849473 ~ 35856736 (+) True LOC120562277
XM_039807298.1 mRNA downstream 116391 36024626 ~ 36026571 (+) True LOC120563160
XM_039807323.1 mRNA downstream 183964 36092199 ~ 36110132 (+) True dek
XM_039807327.1 mRNA downstream 202815 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA downstream 203848 36112083 ~ 36129242 (+) False LOC120563175
XM_039807324.1 mRNA downstream 208515 36116750 ~ 36129242 (+) True LOC120563175
TU105193 other upstream 19854 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 499344 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 719827 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1051494 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1363647 34529355 ~ 34544379 (+) False G78200
TU105334 other downstream 229524 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 385752 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 484017 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 484017 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 783158 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile