RNA id: TU105271


Basic Information

Item Value
RNA id TU105271
length 250
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G78706
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35908820 ~ 35909069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgttttagctacagagtgagacctcttttcttcttcttcttctgtactatctttgattgcactcgcacatgctcagtagctcagatgtagagcatgtcagctagctaactctagagacagtaaaagaaagcctgtttctccaactttggtcagttacaaggcaggattagctgggagacttctaaatgagggcgcacatggaagtagttcttttgtagattatggtgaacttgtgtgtgttgtagcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105270 lncRNA upstream 585 35908026 ~ 35908235 (+) True G78705
TU105215 lncRNA upstream 87179 35821290 ~ 35821641 (+) True G78674
TU105210 lncRNA upstream 95213 35775272 ~ 35813607 (+) True G78669
TU105209 lncRNA upstream 95213 35783426 ~ 35813607 (+) False G78669
TU105208 lncRNA upstream 125157 35783426 ~ 35783663 (+) False G78669
TU105272 lncRNA downstream 19371 35928440 ~ 35928896 (+) True G78707
TU105281 lncRNA downstream 53704 35962773 ~ 35963505 (+) True G78716
TU105307 lncRNA downstream 125279 36034348 ~ 36034652 (+) True G78736
TU105328 lncRNA downstream 178804 36087873 ~ 36088096 (+) True G78756
TU105344 lncRNA downstream 201782 36110851 ~ 36190839 (+) False G78759
XM_039805921.1 mRNA upstream 7928 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 24885 35875127 ~ 35883935 (+) True LOC120562454
XM_039805923.1 mRNA upstream 36576 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA upstream 36576 35865849 ~ 35872244 (+) False LOC120562279
XM_039805922.1 mRNA upstream 52084 35849473 ~ 35856736 (+) True LOC120562277
XM_039807298.1 mRNA downstream 115557 36024626 ~ 36026571 (+) True LOC120563160
XM_039807323.1 mRNA downstream 183130 36092199 ~ 36110132 (+) True dek
XM_039807327.1 mRNA downstream 201981 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA downstream 203014 36112083 ~ 36129242 (+) False LOC120563175
XM_039807324.1 mRNA downstream 207681 36116750 ~ 36129242 (+) True LOC120563175
TU105193 other upstream 20648 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 500138 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 720621 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1052288 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1364441 34529355 ~ 34544379 (+) False G78200
TU105334 other downstream 228690 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 384918 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 483183 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 483183 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 782324 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile