RNA id: TU105272


Basic Information

Item Value
RNA id TU105272
length 309
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G78707
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35928440 ~ 35928896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctgtctaatgtatatgagagcattactatatagggacctgtctaatgtatatgagagcattactatatagggacctgtctaatgtatatgagagcattactatatagggacctgtctaatgtatatgagagcattactatatagggacctgtctaatgtatatgagagcattactatatagggacctgtctaatgtatatgagagtattactatatagggacctgtctaatgtatatgagagcatgttttgtgttgcatgagagtatgtgttgagagatgcttattttctgtatttagtgttgtcttt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105271 lncRNA upstream 19371 35908820 ~ 35909069 (+) True G78706
TU105270 lncRNA upstream 20205 35908026 ~ 35908235 (+) True G78705
TU105215 lncRNA upstream 106799 35821290 ~ 35821641 (+) True G78674
TU105210 lncRNA upstream 114833 35775272 ~ 35813607 (+) True G78669
TU105281 lncRNA downstream 33877 35962773 ~ 35963505 (+) True G78716
TU105307 lncRNA downstream 105452 36034348 ~ 36034652 (+) True G78736
TU105328 lncRNA downstream 158977 36087873 ~ 36088096 (+) True G78756
TU105344 lncRNA downstream 181955 36110851 ~ 36190839 (+) False G78759
TU105341 lncRNA downstream 199983 36128879 ~ 36159302 (+) False G78759
XM_039805921.1 mRNA upstream 27548 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 44505 35875127 ~ 35883935 (+) True LOC120562454
XM_039805923.1 mRNA upstream 56196 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA upstream 56196 35865849 ~ 35872244 (+) False LOC120562279
XM_039805922.1 mRNA upstream 71704 35849473 ~ 35856736 (+) True LOC120562277
XM_039807298.1 mRNA downstream 95730 36024626 ~ 36026571 (+) True LOC120563160
XM_039807323.1 mRNA downstream 163303 36092199 ~ 36110132 (+) True dek
XM_039807327.1 mRNA downstream 182154 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA downstream 183187 36112083 ~ 36129242 (+) False LOC120563175
XM_039807324.1 mRNA downstream 187854 36116750 ~ 36129242 (+) True LOC120563175
TU105193 other upstream 40268 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 519758 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 740241 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1071908 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1384061 34529355 ~ 34544379 (+) False G78200
TU105334 other downstream 208863 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 365091 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 463356 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 463356 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 762497 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile