RNA id: TU105307


Basic Information

Item Value
RNA id TU105307
length 305
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G78736
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36034348 ~ 36034652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctaactgcaccgttgacaagcctctcccagcagcacgttgttcaagcacccatgtgtgactcgttcctccagctctggccatcttgctttcagcccgcgattagccgattagctttctttgttttcttcattgcataagagtcaccttttcgccagtccctcacaagtttctcccttgtttcaaactttctttctgctgctcgattaccgttttcggctgcatattttactacctgcagtttatctcttttctctttctcagttgtctttaggagcagcattctagttgtcacaagcataGAG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105281 lncRNA upstream 70843 35962773 ~ 35963505 (+) True G78716
TU105272 lncRNA upstream 105452 35928440 ~ 35928896 (+) True G78707
TU105271 lncRNA upstream 125279 35908820 ~ 35909069 (+) True G78706
TU105270 lncRNA upstream 126113 35908026 ~ 35908235 (+) True G78705
TU105215 lncRNA upstream 212707 35821290 ~ 35821641 (+) True G78674
TU105328 lncRNA downstream 53221 36087873 ~ 36088096 (+) True G78756
TU105344 lncRNA downstream 76199 36110851 ~ 36190839 (+) False G78759
TU105341 lncRNA downstream 94227 36128879 ~ 36159302 (+) False G78759
TU105342 lncRNA downstream 94227 36128879 ~ 36133280 (+) True G78759
TU105332 lncRNA downstream 109025 36143677 ~ 36159302 (+) False G78759
XM_039807298.1 mRNA upstream 7777 36024626 ~ 36026571 (+) True LOC120563160
XM_039805921.1 mRNA upstream 133456 35896350 ~ 35900892 (+) True LOC120562276
XM_039806167.1 mRNA upstream 150413 35875127 ~ 35883935 (+) True LOC120562454
XM_039805923.1 mRNA upstream 162104 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA upstream 162104 35865849 ~ 35872244 (+) False LOC120562279
XM_039807323.1 mRNA downstream 57547 36092199 ~ 36110132 (+) True dek
XM_039807327.1 mRNA downstream 76398 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA downstream 77431 36112083 ~ 36129242 (+) False LOC120563175
XM_039807324.1 mRNA downstream 82098 36116750 ~ 36129242 (+) True LOC120563175
XM_039807326.1 mRNA downstream 82098 36116750 ~ 36129242 (+) False LOC120563175
TU105193 other upstream 146176 35865842 ~ 35888172 (+) False LOC120562279
TU105077 other upstream 625666 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 846149 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1177816 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1489969 34529355 ~ 34544379 (+) False G78200
TU105334 other downstream 103107 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 259335 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 357600 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 357600 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 656741 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile